View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17043_low_25 (Length: 344)
Name: NF17043_low_25
Description: NF17043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17043_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 8e-89; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 160 - 325
Target Start/End: Original strand, 47497132 - 47497297
Alignment:
| Q |
160 |
aatttcttcattaactttttaagtacctagactcagacatttgtgtgacattgtgaaggaagtagtgtacttgatacatgaatattcttccacctatata |
259 |
Q |
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| T |
47497132 |
aatttcttcattaactttttaagtacctagactcagacatttgtgtgacattgtgaaggaagtagtgtacttgatacatgaatattcttccacctatata |
47497231 |
T |
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| Q |
260 |
aagttactgttaaagaaaggaaccctatattgctgtttgttgtttgatcaactttaaagtgtttaa |
325 |
Q |
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| T |
47497232 |
aagttactgttaaagaaaggaaccctatattgctgtttgttgtttgatcaactttaaagtgtttaa |
47497297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 47496787 - 47496880
Alignment:
| Q |
1 |
aaaaatattaattagtttggttgatggatattttaatttggtctaatatcgaaaagcatggtagttggaatatagggaaaggttgacaaataca |
94 |
Q |
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| T |
47496787 |
aaaaatattaattagtttggttgatggatattttaatttggtctaatatcgaaaagtatggtagttggaatatagggaaaggttgacaaataca |
47496880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 47496973 - 47497066
Alignment:
| Q |
1 |
aaaaatattaattagtttggttgatggatattttaatttggtctaatatcgaaaagcatggtagttggaatatagggaaaggttgacaaataca |
94 |
Q |
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| T |
47496973 |
aaaaatattaattagtttggttgatggatattttaatttggtctaatatcgaaaagtatggtagttggaatatagggaaaggttgacaaataca |
47497066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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