View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17043_low_27 (Length: 335)
Name: NF17043_low_27
Description: NF17043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17043_low_27 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 33063858 - 33064193
Alignment:
| Q |
1 |
atttatctatttttcgatatgcttt-tgttagatatggatgattggctaacaagtgtttaatttgatctttcgcatataacaaacacgattacatataat |
99 |
Q |
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| T |
33063858 |
atttatctatttttcgatatgctttctgttagatatggatgattggctaacaagtgtttaatttgatctttcgcatataacaaacacgattacatataat |
33063957 |
T |
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| Q |
100 |
tataaatgctcctatatatgattttaaaagattagttcatatatcactttctccgacaaaacacacatgcataaactaaggttaaattttgtagtttcga |
199 |
Q |
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| T |
33063958 |
tataaatgctcctatatatgattttaaaagattagttcatatatcactttctccgacaaaacacacatgcataaactaaggttaaattttgtagtttcga |
33064057 |
T |
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| Q |
200 |
agaggatagtggagtggtttatggaacaggatgatccttacacatcaactttattgcgttggatatactgtttacaattgtnnnnnnnnnnnnnnnnnta |
299 |
Q |
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| T |
33064058 |
agaggatagtggagtggtttatggaacaggatgatccttacacatcaactttattgcgttggatatactgtttacaattgtaaaaaagaaaacaaaaata |
33064157 |
T |
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| Q |
300 |
tttactgttttcgaacatggaaaagattaaatggac |
335 |
Q |
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| T |
33064158 |
tttactgttttcgaacatggaaaagattaaatggac |
33064193 |
T |
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