View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17043_low_28 (Length: 276)

Name: NF17043_low_28
Description: NF17043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17043_low_28
NF17043_low_28
[»] chr2 (7 HSPs)
chr2 (14-261)||(14268565-14268812)
chr2 (185-250)||(42205838-42205903)
chr2 (184-245)||(18570968-18571029)
chr2 (190-239)||(34687008-34687058)
chr2 (190-239)||(34709420-34709470)
chr2 (199-232)||(17427326-17427359)
chr2 (192-253)||(39017326-39017386)
[»] chr3 (9 HSPs)
chr3 (180-252)||(18268003-18268075)
chr3 (186-239)||(28576718-28576771)
chr3 (182-235)||(32166183-32166236)
chr3 (182-230)||(23271994-23272042)
chr3 (180-235)||(47542541-47542596)
chr3 (184-233)||(20691327-20691376)
chr3 (184-233)||(40150573-40150622)
chr3 (190-234)||(21110471-21110515)
chr3 (199-235)||(49636843-49636879)
[»] scaffold0036 (1 HSPs)
scaffold0036 (166-233)||(9731-9798)
[»] chr1 (4 HSPs)
chr1 (184-252)||(31667414-31667482)
chr1 (199-239)||(29230067-29230107)
chr1 (184-239)||(44296497-44296551)
chr1 (184-253)||(6427338-6427407)
[»] chr4 (8 HSPs)
chr4 (180-239)||(18513239-18513298)
chr4 (180-235)||(2976700-2976755)
chr4 (199-253)||(10164451-10164505)
chr4 (166-231)||(5225597-5225662)
chr4 (184-233)||(33950144-33950193)
chr4 (199-235)||(8457931-8457967)
chr4 (187-239)||(14465299-14465351)
chr4 (199-239)||(32369929-32369969)
[»] chr6 (9 HSPs)
chr6 (184-238)||(9617437-9617491)
chr6 (166-233)||(9195738-9195805)
chr6 (183-230)||(10335377-10335424)
chr6 (184-253)||(7265595-7265664)
chr6 (165-233)||(28862129-28862198)
chr6 (184-232)||(9629392-9629440)
chr6 (147-250)||(18262748-18262852)
chr6 (187-239)||(30866149-30866201)
chr6 (199-239)||(34625736-34625776)
[»] chr7 (5 HSPs)
chr7 (186-239)||(38134410-38134463)
chr7 (171-233)||(44172879-44172941)
chr7 (205-253)||(12843057-12843105)
chr7 (217-253)||(21139028-21139064)
chr7 (181-233)||(36314626-36314678)
[»] chr5 (3 HSPs)
chr5 (180-249)||(38749561-38749630)
chr5 (184-239)||(30502390-30502445)
chr5 (184-239)||(30542733-30542788)
[»] chr8 (5 HSPs)
chr8 (200-239)||(2517109-2517148)
chr8 (186-235)||(3066048-3066097)
chr8 (182-243)||(10356862-10356922)
chr8 (184-233)||(13844598-13844647)
chr8 (185-233)||(31236580-31236628)
[»] scaffold0027 (1 HSPs)
scaffold0027 (183-253)||(145908-145978)


Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 261
Target Start/End: Original strand, 14268565 - 14268812
Alignment:
Q  14 aatatcaagattgccatataacagcaacactaaccacaatttaaaatcttcctcaaattactagcactatgctaaaacttaaagacacaaactaagaaaa 113  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  14268565 aatatcaagattgccatataacagcaacaccaaccacaatttaaaatcttcctcaaataacttgcactatgctaaaacttaaagacacaaactaagaaaa 14268664  T
Q  114 gagcacattacctatggagcacctacacttctggtgtccaacacatgtcagagtgtctgacaccatcacaacaccgacacatatcattaccttcaattaa 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  14268665 gagcacattacctatggagcacctacacttctggtgtccaacacatgtcagagtgtctgacaccatcacaacaccgacacatatcattacgttcaattaa 14268764  T
Q  214 gtcattttctcaaattattaccggtgctgacatgtcagtgcatagtat 261  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||    
T  14268765 gtcattttctcaaattattaccggtgttgacgtgtcagtgcatagtat 14268812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 42205838 - 42205903
Alignment:
Q  185 caccgacacatatcattaccttcaattaagtcattttctcaaattattaccggtgctgacatgtca 250  Q
    ||||||||||||| ||||  |||||||||||||||||||||||||||||  |||| || |||||||    
T  42205838 caccgacacatatgattattttcaattaagtcattttctcaaattattattggtgttggcatgtca 42205903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 245
Target Start/End: Complemental strand, 18571029 - 18570968
Alignment:
Q  184 acaccgacacatatcattaccttcaattaagtcattttctcaaattattaccggtgctgaca 245  Q
    |||| ||||||||| ||||| || ||||| |||||||||||||||||||| ||||| |||||    
T  18571029 acactgacacatatgattacattgaattatgtcattttctcaaattattatcggtgttgaca 18570968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 34687058 - 34687008
Alignment:
Q  190 acacatatcattaccttcaattaag-tcattttctcaaattattaccggtg 239  Q
    |||||||| ||||| |||||||||  |||||||||||||||||||||||||    
T  34687058 acacatatgattactttcaattaatatcattttctcaaattattaccggtg 34687008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 34709470 - 34709420
Alignment:
Q  190 acacatatcattaccttcaattaag-tcattttctcaaattattaccggtg 239  Q
    |||||||| ||||| |||||||||  |||||||||||||||||||||||||    
T  34709470 acacatatgattactttcaattaatatcattttctcaaattattaccggtg 34709420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 232
Target Start/End: Original strand, 17427326 - 17427359
Alignment:
Q  199 attaccttcaattaagtcattttctcaaattatt 232  Q
    ||||||||||||||| ||||||||||||||||||    
T  17427326 attaccttcaattaattcattttctcaaattatt 17427359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 253
Target Start/End: Complemental strand, 39017386 - 39017326
Alignment:
Q  192 acatatcattaccttcaattaagtcattttctcaaattattaccggtgctgacatgtcagtg 253  Q
    |||||| ||||| |||||||| | |||||| ||||||||||||||||| | |||||||||||    
T  39017386 acatatgattacattcaattatgccatttt-tcaaattattaccggtggtaacatgtcagtg 39017326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 252
Target Start/End: Original strand, 18268003 - 18268075
Alignment:
Q  180 cacaacaccgacacatatcattaccttcaattaagtcattttctcaaattattaccggtgctgacatgtcagt 252  Q
    |||||||||||||||| | ||||| ||||||||| ||||||||||||||||||| | ||| ||||||||||||    
T  18268003 cacaacaccgacacatgtgattacgttcaattaattcattttctcaaattattatcagtgttgacatgtcagt 18268075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 239
Target Start/End: Complemental strand, 28576771 - 28576718
Alignment:
Q  186 accgacacatatcattaccttcaattaagtcattttctcaaattattaccggtg 239  Q
    |||||||||| | ||||| |||||||  ||||||||||||||||||||||||||    
T  28576771 accgacacatgtaattacattcaattttgtcattttctcaaattattaccggtg 28576718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 32166183 - 32166236
Alignment:
Q  182 caacaccgacacatatcattaccttcaattaagtcattttctcaaattattacc 235  Q
    |||||||||||| |  |||||| |||||||| ||||||||||||||||||||||    
T  32166183 caacaccgacaccttacattacattcaattatgtcattttctcaaattattacc 32166236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 23271994 - 23272042
Alignment:
Q  182 caacaccgacacatatcattaccttcaattaagtcattttctcaaatta 230  Q
    |||||||||||||||| ||||| |||||||| |||| ||||||||||||    
T  23271994 caacaccgacacatatgattacattcaattatgtcagtttctcaaatta 23272042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 47542596 - 47542541
Alignment:
Q  180 cacaacaccgacacatatcattaccttcaattaagtcattttctcaaattattacc 235  Q
    |||||||||||||||| | ||||| ||||| ||  |||||||||||||||||||||    
T  47542596 cacaacaccgacacatgtgattacattcaaatagttcattttctcaaattattacc 47542541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 20691376 - 20691327
Alignment:
Q  184 acaccgacacatatcattaccttcaattaagtcattttctcaaattatta 233  Q
    |||||||||||||| |||||  | ||||| ||||||||||||||||||||    
T  20691376 acaccgacacatatgattacactgaattatgtcattttctcaaattatta 20691327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 40150573 - 40150622
Alignment:
Q  184 acaccgacacatatcattaccttcaattaagtcattttctcaaattatta 233  Q
    |||||||||||||| ||||| || |||||  |||||||||||||||||||    
T  40150573 acaccgacacatatgattacattgaattatatcattttctcaaattatta 40150622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 21110471 - 21110515
Alignment:
Q  190 acacatatcattaccttcaattaagtcattttctcaaattattac 234  Q
    |||||||  ||||| |||||||| |||||||||||||||||||||    
T  21110471 acacataatattacattcaattatgtcattttctcaaattattac 21110515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 49636843 - 49636879
Alignment:
Q  199 attaccttcaattaagtcattttctcaaattattacc 235  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  49636843 attacattcaattaattcattttctcaaattattacc 49636879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 9731 - 9798
Alignment:
Q  166 gtgtctgacaccatcacaacaccgacacatatcattaccttcaattaagtcattttctcaaattatta 233  Q
    ||||||||||||| ||| |||||||||||||| |||||  | |||||||| |||||||||||||||||    
T  9731 gtgtctgacaccaacacgacaccgacacatataattacactgaattaagtgattttctcaaattatta 9798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 252
Target Start/End: Complemental strand, 31667482 - 31667414
Alignment:
Q  184 acaccgacacatatcattaccttcaattaagtcattttctcaaattattaccggtgctgacatgtcagt 252  Q
    |||||||||||| | ||||| || ||||| |||||||||| ||||||||||| ||| ||||||||||||    
T  31667482 acaccgacacatgtgattacatttaattatgtcattttctaaaattattaccagtgttgacatgtcagt 31667414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 29230107 - 29230067
Alignment:
Q  199 attaccttcaattaagtcattttctcaaattattaccggtg 239  Q
    ||||| |||||||| ||||||||||||||||||||||||||    
T  29230107 attacattcaattatgtcattttctcaaattattaccggtg 29230067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 44296497 - 44296551
Alignment:
Q  184 acaccgacacatatcattaccttcaattaagtcattttctcaaattattaccggtg 239  Q
    |||||||||||||| |||| ||  ||||| ||||||||||||||||||||||||||    
T  44296497 acaccgacacatatgattaacta-aattatgtcattttctcaaattattaccggtg 44296551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 253
Target Start/End: Complemental strand, 6427407 - 6427338
Alignment:
Q  184 acaccgacacatatcattaccttcaattaagtcattttctcaaattattaccggtgctgacatgtcagtg 253  Q
    ||||| |||||||| ||||| || ||||| || ||||||||||||||||| ||||| || | ||||||||    
T  6427407 acaccaacacatataattacattgaattatgtgattttctcaaattattagcggtgttggcgtgtcagtg 6427338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 18513239 - 18513298
Alignment:
Q  180 cacaacaccgacacatatcattaccttcaattaagtcattttctcaaattattaccggtg 239  Q
    |||||||| ||||||||| ||||| || ||||| |||||||||||||||||||| |||||    
T  18513239 cacaacactgacacatatgattacattgaattatgtcattttctcaaattattatcggtg 18513298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 2976755 - 2976700
Alignment:
Q  180 cacaacaccgacacatatcattaccttcaattaagtcattttctcaaattattacc 235  Q
    |||||||| |||||  || ||||| |||||||| ||||||||||||||||||||||    
T  2976755 cacaacactgacacgcatgattacattcaattatgtcattttctcaaattattacc 2976700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 10164505 - 10164451
Alignment:
Q  199 attaccttcaattaagtcattttctcaaattattaccggtgctgacatgtcagtg 253  Q
    ||||| |||||||| | |||||||| |||||| |||||||| |||||||||||||    
T  10164505 attacattcaattatgccattttcttaaattactaccggtgttgacatgtcagtg 10164451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 5225597 - 5225662
Alignment:
Q  166 gtgtctgacaccatcacaacaccgacacatatcattaccttcaattaagtcattttctcaaattat 231  Q
    ||||| ||||||| ||| |||||||||||||| ||| | || ||||| |||||| |||||||||||    
T  5225597 gtgtccgacaccaacacgacaccgacacatattattgcattgaattatgtcattatctcaaattat 5225662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 33950193 - 33950144
Alignment:
Q  184 acaccgacacatatcattaccttcaattaagtcattttctcaaattatta 233  Q
    |||||||||||||| ||||| || ||||| || |||||||||||||||||    
T  33950193 acaccgacacatatgattacattaaattatgtgattttctcaaattatta 33950144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 8457967 - 8457931
Alignment:
Q  199 attaccttcaattaagtcattttctcaaattattacc 235  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  8457967 attacattcaattatgtcattttctcaaattattacc 8457931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 14465299 - 14465351
Alignment:
Q  187 ccgacacatatcattaccttcaattaagtcattttctcaaattattaccggtg 239  Q
    ||||||||||| ||||  || ||||| |||||||||||||||||||| |||||    
T  14465299 ccgacacatatgattaaattgaattatgtcattttctcaaattattatcggtg 14465351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 32369929 - 32369969
Alignment:
Q  199 attaccttcaattaagtcattttctcaaattattaccggtg 239  Q
    ||||| ||||||||| ||||||||||||||||||| |||||    
T  32369929 attacattcaattaattcattttctcaaattattatcggtg 32369969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 9617491 - 9617437
Alignment:
Q  184 acaccgacacatatcattaccttcaattaagtcattttctcaaattattaccggt 238  Q
    |||||||||||||| ||||| || ||||| || ||||||||||||||||||||||    
T  9617491 acaccgacacatataattacattgaattatgtgattttctcaaattattaccggt 9617437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 9195738 - 9195805
Alignment:
Q  166 gtgtctgacaccatcacaacaccgacacatatcattaccttcaattaagtcattttctcaaattatta 233  Q
    ||||| ||||||  ||| |||||||||||||| |||||  | ||||| ||||||||||||||||||||    
T  9195738 gtgtcagacacctacacgacaccgacacatataattacactaaattatgtcattttctcaaattatta 9195805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 230
Target Start/End: Original strand, 10335377 - 10335424
Alignment:
Q  183 aacaccgacacatatcattaccttcaattaagtcattttctcaaatta 230  Q
    ||||||||||||| | ||||| |||||||| |||||||||||||||||    
T  10335377 aacaccgacacatctgattacattcaattatgtcattttctcaaatta 10335424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 253
Target Start/End: Original strand, 7265595 - 7265664
Alignment:
Q  184 acaccgacacatatcattaccttcaattaagtcattttctcaaattattaccggtgctgacatgtcagtg 253  Q
    |||||||||||||| |||||  | ||||| || ||||||||||||||||| ||||| || | ||||||||    
T  7265595 acaccgacacatataattacactgaattatgtgattttctcaaattattagcggtgttggcgtgtcagtg 7265664  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 233
Target Start/End: Complemental strand, 28862198 - 28862129
Alignment:
Q  165 agtgtctgacaccatcacaacaccgacacatatcattaccttcaattaa-gtcattttctcaaattatta 233  Q
    |||||| ||||||| ||| |||||||||||||| |||||  | |||||| |||||||| |||||||||||    
T  28862198 agtgtcagacaccaacacgacaccgacacatatgattacactgaattaatgtcattttatcaaattatta 28862129  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 9629440 - 9629392
Alignment:
Q  184 acaccgacacatatcattaccttcaattaagtcattttctcaaattatt 232  Q
    |||||||||||||| ||||| || ||||| || ||||||||||||||||    
T  9629440 acaccgacacatataattacattgaattatgtgattttctcaaattatt 9629392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 250
Target Start/End: Original strand, 18262748 - 18262852
Alignment:
Q  147 gtgtccaacacatgtcagagtgtctgacaccatcacaacaccgacacatatcattaccttcaattaagtc-attttctcaaattattaccggtgctgaca 245  Q
    ||||||||||| | |||| || | ||||| || |||||||| ||||||| | ||||| ||||||||| || ||||| |||||||||||  |||| ||| |    
T  18262748 gtgtccaacacgtttcagtgtatttgacatcaacacaacactgacacatgtgattactttcaattaattcaattttatcaaattattattggtgttgata 18262847  T
Q  246 tgtca 250  Q
    |||||    
T  18262848 tgtca 18262852  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 30866149 - 30866201
Alignment:
Q  187 ccgacacatatcattaccttcaattaagtcattttctcaaattattaccggtg 239  Q
    ||||||||||| ||||| || ||||| || ||||||||||||||||| |||||    
T  30866149 ccgacacatataattacattgaattatgtgattttctcaaattattagcggtg 30866201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 34625776 - 34625736
Alignment:
Q  199 attaccttcaattaagtcattttctcaaattattaccggtg 239  Q
    ||||| ||||||||| ||||||||||||||||||| |||||    
T  34625776 attacattcaattaattcattttctcaaattattatcggtg 34625736  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 38134410 - 38134463
Alignment:
Q  186 accgacacatatcattaccttcaattaagtcattttctcaaattattaccggtg 239  Q
    |||||||||||| ||||| || ||||| |||||||||||||||||||| |||||    
T  38134410 accgacacatatgattacattgaattatgtcattttctcaaattattatcggtg 38134463  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 44172879 - 44172941
Alignment:
Q  171 tgacaccatcacaacaccgacacatatcattaccttcaattaagtcattttctcaaattatta 233  Q
    |||||||| ||||||||  |||||| | ||||| || ||||| ||||||||||||||||||||    
T  44172879 tgacaccaacacaacacaaacacatgtgattacattgaattatgtcattttctcaaattatta 44172941  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 12843057 - 12843105
Alignment:
Q  205 ttcaattaagtcattttctcaaattattaccggtgctgacatgtcagtg 253  Q
    |||||||| ||||||||||||||||| |||||||  |||| ||||||||    
T  12843057 ttcaattatgtcattttctcaaattaataccggtcttgacgtgtcagtg 12843105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 253
Target Start/End: Original strand, 21139028 - 21139064
Alignment:
Q  217 attttctcaaattattaccggtgctgacatgtcagtg 253  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  21139028 attttctcaaattattaacggtgttgacatgtcagtg 21139064  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 36314626 - 36314678
Alignment:
Q  181 acaacaccgacacatatcattaccttcaattaagtcattttctcaaattatta 233  Q
    |||||||| |||||||| ||||| || || || ||||||||||||||||||||    
T  36314626 acaacaccaacacatatgattacattgaaatatgtcattttctcaaattatta 36314678  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 38749561 - 38749630
Alignment:
Q  180 cacaacaccgacacatatcattaccttcaattaagtcattttctcaaattattaccggtgctgacatgtc 249  Q
    ||||||||| |||||||| ||||| || ||||| |||||||| ||||||||||| |||||  ||||||||    
T  38749561 cacaacaccaacacatataattacattgaattatgtcattttttcaaattattatcggtgtcgacatgtc 38749630  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 30502390 - 30502445
Alignment:
Q  184 acaccgacacatatcattaccttcaattaagtcattttctcaaattattaccggtg 239  Q
    |||||||||||||| |||||  | |||||||| ||||||||||||||||| |||||    
T  30502390 acaccgacacatataattacactgaattaagtgattttctcaaattattagcggtg 30502445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 30542733 - 30542788
Alignment:
Q  184 acaccgacacatatcattaccttcaattaagtcattttctcaaattattaccggtg 239  Q
    |||||||||||||| |||||  | |||||||| ||||||||||||||||| |||||    
T  30542733 acaccgacacatataattacactgaattaagtgattttctcaaattattagcggtg 30542788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 239
Target Start/End: Complemental strand, 2517148 - 2517109
Alignment:
Q  200 ttaccttcaattaagtcattttctcaaattattaccggtg 239  Q
    |||| ||||||||| |||||||||||||||||||||||||    
T  2517148 ttacattcaattaattcattttctcaaattattaccggtg 2517109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 3066097 - 3066048
Alignment:
Q  186 accgacacatatcattaccttcaattaagtcattttctcaaattattacc 235  Q
    |||||||||| | ||||| |||||||||  ||||||||||||||||||||    
T  3066097 accgacacatgttattacattcaattaatccattttctcaaattattacc 3066048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 10356922 - 10356862
Alignment:
Q  182 caacaccgacacatatcattaccttcaattaagtcattttctcaaattattaccggtgctga 243  Q
    |||||||||||||| | ||||| ||||||||| | | ||| |||||||||||||||||||||    
T  10356922 caacaccgacacatgtgattacattcaattaatttaattt-tcaaattattaccggtgctga 10356862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 13844598 - 13844647
Alignment:
Q  184 acaccgacacatatcattaccttcaattaagtcattttctcaaattatta 233  Q
    |||||||||||||| |||||  ||||||| || |||||||||||||||||    
T  13844598 acaccgacacatataattacactcaattatgtgattttctcaaattatta 13844647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 31236580 - 31236628
Alignment:
Q  185 caccgacacatatcattaccttcaattaagtcattttctcaaattatta 233  Q
    ||||||||||||| ||||| || ||||| || |||||||||||||||||    
T  31236580 caccgacacatataattacattgaattatgtgattttctcaaattatta 31236628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 253
Target Start/End: Complemental strand, 145978 - 145908
Alignment:
Q  183 aacaccgacacatatcattaccttcaattaagtcattttctcaaattattaccggtgctgacatgtcagtg 253  Q
    |||||| ||||||||   ||| || |||||| | ||||||||||| ||||||||||| |||||||||||||    
T  145978 aacaccaacacatatggatacattgaattaatttattttctcaaactattaccggtgttgacatgtcagtg 145908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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