View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17043_low_30 (Length: 270)
Name: NF17043_low_30
Description: NF17043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17043_low_30 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 26305056 - 26305316
Alignment:
| Q |
1 |
taacagcaaaacaatcatctgtgccttgtccttctcaaaataattgaaatctggatcaggacaatgaatgatctctggactagacgggatatttgaattc |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26305056 |
taacagcaaaacaatcatctg--ccttgtccttctcaaaattattgaaatctggatcaggacaatgaatgatctctggactagacgggatatttgaattc |
26305153 |
T |
|
| Q |
101 |
ggtggagaacagttttcctcatttaacattctaggatcaagatctgactccaattccttaccaccttgaacatgagagtgcccgtctttgcttgtattcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
26305154 |
ggtggagaacagttttcctcatttaacattctaggatcaagatctgactccaattccttaccaccttgaacatgagagtgcccatctttgcttgtattcc |
26305253 |
T |
|
| Q |
201 |
ttaaaaatgtttcttcagacacgttctttttctcaacttcatcaatgttcaatgattcatctc |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26305254 |
ttaaaaatgtttcttcagacacgttctttttctcaacttcatcaatgttcaatgattcatctc |
26305316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 36532292 - 36532189
Alignment:
| Q |
1 |
taacagcaaaacaatcatctgtgccttgtccttctcaaaataattgaaatctggatcaggacaatgaatgatctctggactagacgggatatttgaattc |
100 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||| |||||||| ||||||||||||| |||| ||||||||||||| || |||| |||||| |
|
|
| T |
36532292 |
taacagcaaaacaatcatcag--ccttgtccttctcaaaattattgaaatttggatcaggacaaacaatggtctctggactagaaggcatatctgaattt |
36532195 |
T |
|
| Q |
101 |
ggtgga |
106 |
Q |
| |
|
|||||| |
|
|
| T |
36532194 |
ggtgga |
36532189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 20715960 - 20716034
Alignment:
| Q |
184 |
gtctttgcttgtattccttaaaaatgtttcttcagacacgttctttttctcaacttcatcaatgttcaatgattc |
258 |
Q |
| |
|
||||||||||||||||| ||||| | ||||||||| ||||||||||| ||||||||||||| |||| |||||||| |
|
|
| T |
20715960 |
gtctttgcttgtattccataaaattatttcttcaggcacgttcttttactcaacttcatcattgttaaatgattc |
20716034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 256
Target Start/End: Original strand, 20628237 - 20628299
Alignment:
| Q |
194 |
gtattccttaaaaatgtttcttcagacacgttctttttctcaacttcatcaatgttcaatgat |
256 |
Q |
| |
|
||||| |||||||||||||||||||||| ||| |||||||||||||||||| |||| |||||| |
|
|
| T |
20628237 |
gtatttcttaaaaatgtttcttcagacatgttgtttttctcaacttcatcattgttaaatgat |
20628299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 36553192 - 36553139
Alignment:
| Q |
1 |
taacagcaaaacaatcatctgtgccttgtccttctcaaaataattgaaatctggat |
56 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
36553192 |
taacaccaaaacaatcatctg--ccttgtccttctcaaaattattgaaatctggat |
36553139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 20628127 - 20628189
Alignment:
| Q |
1 |
taacagcaaaacaatcatctgtgccttgtccttctcaaaataattgaaatctggatcaggacaat |
65 |
Q |
| |
|
||||||||||||||||||||| | | |||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
20628127 |
taacagcaaaacaatcatctg--ctgtttccttctcgaaattattgaaatctggatcaggacaat |
20628189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University