View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17043_low_4 (Length: 658)

Name: NF17043_low_4
Description: NF17043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17043_low_4
NF17043_low_4
[»] chr6 (4 HSPs)
chr6 (14-446)||(31377799-31378231)
chr6 (442-640)||(31377523-31377723)
chr6 (132-256)||(31393609-31393734)
chr6 (132-256)||(30607771-30607894)
[»] chr8 (1 HSPs)
chr8 (251-286)||(41569211-41569246)
[»] chr2 (1 HSPs)
chr2 (251-287)||(44736775-44736811)


Alignment Details
Target: chr6 (Bit Score: 329; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 14 - 446
Target Start/End: Complemental strand, 31378231 - 31377799
Alignment:
Q  14 atgaaagaatgggaacgcaaattgagaaacaaatatcgagactccattgaagagtgtagggaaaagatgggaaggcagagggatagtgtccaaatggcac 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31378231 atgaaagaatgggaacgcaaattgagaaacaaatatcgagactccattgaagagtgtagggaaaagatgggaaggcagagggatagtgtccaaatggcac 31378132  T
Q  114 aaatagaaagatacaaggaatttggtgattgaaagagaaatggagaatgaaacatgtgtgatagatagaactgtaatttaatgctgaatgagagatgtgg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31378131 aaatagaaagatacaaggaatttggtgattgaaagagaaatggagaatgaaacatgtgtgatagatagaactgtaatttaatgctgaatgagagatgtgg 31378032  T
Q  214 aaagttctcgagaaaacgtagacggcaaacaattttttaaattgtttcttgttaataggatcggatgaagtatatgnnnnnnnncacaatatatattata 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||        ||||||||||||||||    
T  31378031 aaagttctcgagaaaacgtagacggcaaacaattttttaaattgtttcttgttaatagaatcggatgaagtatatgttttttttcacaatatatattata 31377932  T
Q  314 cactcgtcatgagnnnnnnnnnnnnngatgataacactagtcatgagttgttttagaagtttttaaaactgaaccatccgatttaatataaatacaannn 413  Q
    |||||||||||||             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||       
T  31377931 cactcgtcatgagttcttatttttttgatgataacactagtcatgagttgttttagaagtttttaaaactgaaccatccgatttaatagaaatacaattt 31377832  T
Q  414 nnnnaaataaaccaagtcatacggttttatcca 446  Q
        ||||||||||| |||| || |||||||||    
T  31377831 ttttaaataaaccaaatcatccgattttatcca 31377799  T

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Target: chr6; HSP #2
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 442 - 640
Target Start/End: Complemental strand, 31377723 - 31377523
Alignment:
Q  442 atccatttttaaaatgaattaaataccatgagttagacataataaatttgaattactagacaaaaaccagtacagcggg--atcttacgaattatatttt 539  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||  |||||||||||||||||||    
T  31377723 atccatttttaaaatgaattaaataccatgagttagacataataaatttgaattattagacaaaaaacagtacagcgggggatcttacgaattatatttt 31377624  T
Q  540 ggataatatacattcataaaattccccactgtaacatgtacactatgacggcaccgtgaaagttataaacactgccatacacgcttttgttgtcaatgtg 639  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  31377623 ggataatatacattcataaaattccccactctaacatgtacactgtgacggcaccgtgaaagttataaacaccgccatacacgcttttgttgtcaatgtg 31377524  T
Q  640 g 640  Q
    |    
T  31377523 g 31377523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 132 - 256
Target Start/End: Complemental strand, 31393734 - 31393609
Alignment:
Q  132 aatttggtgattgaaagagaaatggagaatgaaaca-tgtgtgatagatagaactgtaatttaatgctgaatgagagatgtggaaagttctcgagaaaac 230  Q
    |||||||||||||||||| ||| | ||||||||||| || |||| |||||||| || ||||  | ||||||||||||||||||||||||||||||||||     
T  31393734 aatttggtgattgaaagaaaaaggaagaatgaaacactgggtgaaagatagaagtgcaattggaagctgaatgagagatgtggaaagttctcgagaaaaa 31393635  T
Q  231 gtagacggcaaacaattttttaaatt 256  Q
    ||||  |||||||||||||| |||||    
T  31393634 gtagggggcaaacaatttttgaaatt 31393609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 132 - 256
Target Start/End: Complemental strand, 30607894 - 30607771
Alignment:
Q  132 aatttggtgattgaaagagaaatggagaatgaaacatgtgtgatagatagaactgtaatttaatgctgaatgagagatgtggaaagttctcgagaaaacg 231  Q
    |||||||||||||||||||||| |  |||||||||| | |||| ||||| || |  |||| || |||||||||||||||||||||||||| ||||||| |    
T  30607894 aatttggtgattgaaagagaaaagacgaatgaaacacgggtgaaagataaaagtacaattgaa-gctgaatgagagatgtggaaagttcttgagaaaatg 30607796  T
Q  232 tagacggcaaacaattttttaaatt 256  Q
     ||  |||||||||||||| |||||    
T  30607795 caggtggcaaacaatttttcaaatt 30607771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 286
Target Start/End: Original strand, 41569211 - 41569246
Alignment:
Q  251 taaattgtttcttgttaataggatcggatgaagtat 286  Q
    ||||||||||||||| ||||||||||||||||||||    
T  41569211 taaattgtttcttgtaaataggatcggatgaagtat 41569246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 44736811 - 44736775
Alignment:
Q  251 taaattgtttcttgttaataggatcggatgaagtata 287  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  44736811 taaattgtttcttgtaaataggatcggaggaagtata 44736775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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