View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17043_low_6 (Length: 565)
Name: NF17043_low_6
Description: NF17043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17043_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 550
Target Start/End: Original strand, 4071965 - 4072517
Alignment:
| Q |
1 |
tggaacagaattggttcttttcattattactattattttgaaatttttgttacaatagtatatgagtattttgatgttgaaaaatggaaaatgatgtgta |
100 |
Q |
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| T |
4071965 |
tggaacagaattggttcttttcattattactattattttgaaatttttgttacaatagtatatgagtattttgatgttgaaaaatggaaaatgatgtgta |
4072064 |
T |
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| Q |
101 |
atgagattcaacaccaactcttgagctcccacatttggtttaaaaagagcatcaaaatgttgttttgccacatcacaaactccaccttaacatgtaattt |
200 |
Q |
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| T |
4072065 |
atgagattcaacaccaactcttgagctcccacatttggtttaaaaagagcatcaaaatgttgttttgccacatcacaaactccaccttgacatgtaattt |
4072164 |
T |
|
| Q |
201 |
cttcacacccctttcattcaagaggttatattcacatttttcttctagctttgaaacgaggttcacaaatgaaaaaacttggttttcaaatctctttctt |
300 |
Q |
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| T |
4072165 |
cttcacacccctttcattcaagaggttatattcacatttttcttcttgctttgaatcgaggctcacaaatgaaaaaacttggttttcaaatctctttctt |
4072264 |
T |
|
| Q |
301 |
caagccaatgtaccttttctcattgccttcttaaaagactcctcttgtatcaacaactttgcatgcttctcattcaacttgtggcaccttctattattgt |
400 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4072265 |
caagccaatgtactttttctcattgccttcttaaaagactcctcttgtatcaacaactctgcatgcttctcattcaacttgtggcaccttctattattgt |
4072364 |
T |
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| Q |
401 |
ctaaaccatgttgtcgaaaccttataaacaaccaattaggatgaggatgaacacc---annnnnnnnnnnnnnatcttcttgatagggtcgatcattaaa |
497 |
Q |
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|||||| ||||| || ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4072365 |
ctaaactatgttttcaaaaccctataaacaaccaattaggatgaggatgaacaccttttttttttttttttttatcttcttgatagggtcgatcattaaa |
4072464 |
T |
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| Q |
498 |
atctcctatgacacaccaatgaagcgaggacatatcacttaaactctcataac |
550 |
Q |
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| T |
4072465 |
atctcctataatacaccaatgaagcgaggacatatcacttaaactctcataac |
4072517 |
T |
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