View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17044_high_1 (Length: 426)
Name: NF17044_high_1
Description: NF17044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17044_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 86; Significance: 6e-41; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 169 - 316
Target Start/End: Original strand, 26261064 - 26261214
Alignment:
| Q |
169 |
attcacacatgttttttaatacaatccttgtaaaacaaaaagagtgaaacatttcgcatcaatgagagaaacaattctcacaaaacagtttgtcnnnnnn |
268 |
Q |
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| T |
26261064 |
attcacacatgttttttaatacagtccttgtaaaacaaaaaaagtgaaacatttcgcatcaatgagagaaacaattctcacaaaacagtttgtcaaaaaa |
26261163 |
T |
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| Q |
269 |
nnnnnnn---tctcacaaaacagtgagtttgtgtgaatcgattcacacatt |
316 |
Q |
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| T |
26261164 |
aaaaaaaaattctcacaaaacagtgagtttgtgtgaatcgattcatacatt |
26261214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 26260910 - 26260984
Alignment:
| Q |
15 |
gttgtctgtttgagaaattagagtgtgaaaaattgaatgtaaaagatagtgttatgttacttatatagttttttg |
89 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26260910 |
gttggctgtttgagaaattagagtgtgaaaaattgaatgtaaaagatagtgttatgttacttatatagttttttg |
26260984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 373 - 415
Target Start/End: Original strand, 26261262 - 26261304
Alignment:
| Q |
373 |
catgtaattatgagatttcaacatggattgtcatcttgatatt |
415 |
Q |
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| T |
26261262 |
catgtaagtatgagatttcaacatggattgtcatcttgatatt |
26261304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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