View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17044_high_12 (Length: 249)
Name: NF17044_high_12
Description: NF17044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17044_high_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 26260860 - 26260626
Alignment:
| Q |
1 |
gaactttgagttattttctatacggaaatatttgtgtgttagagtgtgattctctagggtttcgccattggaggcaattgaaagctaaatgaaagaccaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26260860 |
gaactttgagttattttctatacggaaatatttgtgtgttagagtgtgattctctagggtttcgccattggaggcaattgaaagctaaatgaaagaccaa |
26260761 |
T |
|
| Q |
101 |
gttcattaacctccaattgaaaaatggggtttttcttcattcaacttgttcatcatcaattgacgtcgtgtcaacaatcaaaggaagatcaaatgtcgag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26260760 |
gttcattaacctccaattgaaaaatggggtttttcttcattcaacttgttcatcatcaattgacgtcgtgtcaacaatcaaaggaagatcaaatgtcgag |
26260661 |
T |
|
| Q |
201 |
tgctcaaagattcaagaggtgcaaggggaatagtg |
235 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
|
|
| T |
26260660 |
tgctcaaagattcaagaggtgcaagggaaatagtg |
26260626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University