View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17044_high_13 (Length: 245)
Name: NF17044_high_13
Description: NF17044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17044_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 748736 - 748523
Alignment:
| Q |
13 |
attctgacgatctttcaaaaggctatgcaatttttgttgttatattggtatgcactttcgtgtctgccttcgcttggtcttggggtcctctcggttggct |
112 |
Q |
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| T |
748736 |
attctgacgatctttcaaaaggctatgcaatatttgttgttatcttggtatgcactttcgtgtctgcctttgcttggtcttggggtcctctcggttggct |
748637 |
T |
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| Q |
113 |
tattccaagtgagacatttccactcgagactcgatcagctggacaaagtgtcacagtttgtgtcaacatgttgttcacctttgtcattgctcaggctttt |
212 |
Q |
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| T |
748636 |
tattccaagtgagacatttccactcgagactcgatcagctggacaaagtgtcacagtttgtgtcaacatgttgttcacctttgtcattgctcaggctttt |
748537 |
T |
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| Q |
213 |
ctatctatgttatg |
226 |
Q |
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| T |
748536 |
ctatctatgttatg |
748523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 87 - 179
Target Start/End: Original strand, 47212629 - 47212721
Alignment:
| Q |
87 |
tggtcttggggtcctctcggttggcttattccaagtgagacatttccactcgagactcgatcagctggacaaagtgtcacagtttgtgtcaac |
179 |
Q |
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| T |
47212629 |
tggtcatggggtccacttgcttggcttattccaagtgagatatttccactagagactcgttctgcaggacaaagtgtaacagtttgtgtcaac |
47212721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 211
Target Start/End: Original strand, 47186001 - 47186125
Alignment:
| Q |
87 |
tggtcttggggtcctctcggttggcttattccaagtgagacatttccactcgagactcgatcagctggacaaagtgtcacagtttgtgtcaacatgttgt |
186 |
Q |
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| T |
47186001 |
tggtcatggggtccacttggttggttaattcctagtgagacatttcctttggagactagatcagctggacaaagtgtgactgtgtttacaaacatgttgt |
47186100 |
T |
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| Q |
187 |
tcacctttgtcattgctcaggcttt |
211 |
Q |
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|||| ||| | |||||||| ||||| |
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| T |
47186101 |
tcacttttcttattgctcaagcttt |
47186125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 211
Target Start/End: Original strand, 47198540 - 47198664
Alignment:
| Q |
87 |
tggtcttggggtcctctcggttggcttattccaagtgagacatttccactcgagactcgatcagctggacaaagtgtcacagtttgtgtcaacatgttgt |
186 |
Q |
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| T |
47198540 |
tggtcatggggtccacttggttggttaattcctagtgagacatttcctttggagactagatcagctggacaaagtgtgactgtgtttacaaacatgttgt |
47198639 |
T |
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| Q |
187 |
tcacctttgtcattgctcaggcttt |
211 |
Q |
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|||| ||| | |||||||| ||||| |
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| T |
47198640 |
tcacttttcttattgctcaagcttt |
47198664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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