View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17044_low_15 (Length: 244)

Name: NF17044_low_15
Description: NF17044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17044_low_15
NF17044_low_15
[»] chr3 (8 HSPs)
chr3 (1-228)||(37852780-37853005)
chr3 (56-106)||(30843661-30843711)
chr3 (56-103)||(20948286-20948333)
chr3 (56-99)||(23195656-23195699)
chr3 (56-99)||(34979110-34979153)
chr3 (55-90)||(50239872-50239907)
chr3 (58-99)||(22153714-22153755)
chr3 (60-104)||(26499844-26499888)
[»] chr8 (5 HSPs)
chr8 (56-103)||(2987004-2987051)
chr8 (55-104)||(36754691-36754740)
chr8 (53-103)||(42659928-42659978)
chr8 (60-104)||(33508620-33508664)
chr8 (55-99)||(41303082-41303126)
[»] chr7 (4 HSPs)
chr7 (58-104)||(5198019-5198065)
chr7 (60-103)||(3116920-3116963)
chr7 (56-102)||(26905153-26905199)
chr7 (58-99)||(27376351-27376392)
[»] chr4 (9 HSPs)
chr4 (55-103)||(38932750-38932798)
chr4 (56-99)||(7616900-7616943)
chr4 (56-106)||(39331100-39331150)
chr4 (56-106)||(48973337-48973387)
chr4 (55-104)||(312694-312743)
chr4 (55-104)||(6552520-6552569)
chr4 (55-99)||(13834456-13834500)
chr4 (56-100)||(47097417-47097461)
chr4 (55-99)||(56095149-56095193)
[»] scaffold0284 (1 HSPs)
scaffold0284 (55-104)||(2491-2540)
[»] scaffold0211 (1 HSPs)
scaffold0211 (55-104)||(20108-20157)
[»] chr5 (2 HSPs)
chr5 (55-104)||(9023351-9023400)
chr5 (66-98)||(4658445-4658477)
[»] chr2 (4 HSPs)
chr2 (60-97)||(33584700-33584737)
chr2 (55-104)||(41746450-41746499)
chr2 (55-99)||(7165693-7165737)
chr2 (55-99)||(17742576-17742620)
[»] chr1 (4 HSPs)
chr1 (55-104)||(49880162-49880211)
chr1 (56-99)||(34826996-34827039)
chr1 (56-88)||(27463841-27463873)
chr1 (56-100)||(36144984-36145028)
[»] scaffold0252 (1 HSPs)
scaffold0252 (55-104)||(17213-17262)
[»] scaffold0114 (1 HSPs)
scaffold0114 (55-104)||(35024-35073)
[»] chr6 (1 HSPs)
chr6 (55-99)||(26293484-26293528)


Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 37853005 - 37852780
Alignment:
Q  1 atattgatattaattcttttctcatagggattgtcatatacttataggatgtatgtgacaataaataagtatattgaaagactaatatgatattattaat 100  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||  ||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  37853005 atattgatattaattcttttctcatagagattgacatatactta--ggatgtatgtgacaataaataagtatattaaaagactaatatgacattattaat 37852908  T
Q  101 gaagcaaatcaaggtaaacgagtacttactagatgtttagtgaccaaaataactattatcaatatgtgtaaatgaaagaaatacattactccttgtcaac 200  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37852907 gaagcaaatcaaggtaaacgagtacttactagatgtttagggatcaaaataactattatcaatatctgtaaatgaaagaaatacattactccttgtcaac 37852808  T
Q  201 aaaagatagatagaattaccgaatttgc 228  Q
    ||||||||||||||||| ||||||||||    
T  37852807 aaaagatagatagaattgccgaatttgc 37852780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 106
Target Start/End: Complemental strand, 30843711 - 30843661
Alignment:
Q  56 tgacaataaataagtatattgaaagactaatatgatattattaatgaagca 106  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  30843711 tgacaataaataagtatattgaaagactaatatgacaatattaatgaagca 30843661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 20948333 - 20948286
Alignment:
Q  56 tgacaataaataagtatattgaaagactaatatgatattattaatgaa 103  Q
    |||||||||||||||||||||||  ||| |||||||| ||||||||||    
T  20948333 tgacaataaataagtatattgaagaactgatatgataatattaatgaa 20948286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 99
Target Start/End: Original strand, 23195656 - 23195699
Alignment:
Q  56 tgacaataaataagtatattgaaagactaatatgatattattaa 99  Q
    ||||||||| ||||||||||||||||||||||||| | ||||||    
T  23195656 tgacaataattaagtatattgaaagactaatatgacaatattaa 23195699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 99
Target Start/End: Original strand, 34979110 - 34979153
Alignment:
Q  56 tgacaataaataagtatattgaaagactaatatgatattattaa 99  Q
    ||||||||| ||||||||||||| ||||||||||||| ||||||    
T  34979110 tgacaataagtaagtatattgaatgactaatatgataatattaa 34979153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 90
Target Start/End: Original strand, 50239872 - 50239907
Alignment:
Q  55 gtgacaataaataagtatattgaaagactaatatga 90  Q
    |||||||||||||||||||||||| |||||||||||    
T  50239872 gtgacaataaataagtatattgaaggactaatatga 50239907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 22153755 - 22153714
Alignment:
Q  58 acaataaataagtatattgaaagactaatatgatattattaa 99  Q
    |||||||||||||||||| ||| |||||||||||| ||||||    
T  22153755 acaataaataagtatattaaaacactaatatgataatattaa 22153714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 26499888 - 26499844
Alignment:
Q  60 aataaataagtatattgaaagactaatatgatattattaatgaag 104  Q
    ||||||||||||||||||| |||| |||||| | |||||||||||    
T  26499888 aataaataagtatattgaatgactgatatgaaaatattaatgaag 26499844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 2987051 - 2987004
Alignment:
Q  56 tgacaataaataagtatattgaaagactaatatgatattattaatgaa 103  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  2987051 tgacaataagtaagtatattgaaagactaatatgatagtattaatgaa 2987004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 36754740 - 36754691
Alignment:
Q  55 gtgacaataaataagtatattgaaagactaatatgatattattaatgaag 104  Q
    |||||||||||||||||||||||| ||||||||||| | ||| |||||||    
T  36754740 gtgacaataaataagtatattgaaggactaatatgacaatatcaatgaag 36754691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 42659978 - 42659928
Alignment:
Q  53 atgtgacaataaataagtatattgaaagactaatatgatattattaatgaa 103  Q
    |||||||||||| ||||||||||||| ||||||||||| | |||| |||||    
T  42659978 atgtgacaataagtaagtatattgaatgactaatatgacaatattgatgaa 42659928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 33508620 - 33508664
Alignment:
Q  60 aataaataagtatattgaaagactaatatgatattattaatgaag 104  Q
    ||||| ||||||||||||| |||||||| |||| |||||||||||    
T  33508620 aataagtaagtatattgaaggactaatacgataatattaatgaag 33508664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 41303082 - 41303126
Alignment:
Q  55 gtgacaataaataagtatattgaaagactaatatgatattattaa 99  Q
    |||||||||| |||||||||| |||||||||||||| | ||||||    
T  41303082 gtgacaataattaagtatattaaaagactaatatgacaatattaa 41303126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 5198019 - 5198065
Alignment:
Q  58 acaataaataagtatattgaaagactaatatgatattattaatgaag 104  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||    
T  5198019 acaataaataagtatattgaaagactaatatgacaatattaatgaag 5198065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 3116963 - 3116920
Alignment:
Q  60 aataaataagtatattgaaagactaatatgatattattaatgaa 103  Q
    ||||| ||||||||||||||||||||||||| | ||||||||||    
T  3116963 aataagtaagtatattgaaagactaatatgacaatattaatgaa 3116920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 102
Target Start/End: Original strand, 26905153 - 26905199
Alignment:
Q  56 tgacaataaataagtatattgaaagactaatatgatattattaatga 102  Q
    ||||||||| ||||||||||||| || |||||||||| |||||||||    
T  26905153 tgacaataagtaagtatattgaaggaataatatgataatattaatga 26905199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 27376392 - 27376351
Alignment:
Q  58 acaataaataagtatattgaaagactaatatgatattattaa 99  Q
    ||||||| |||||||||||||| |||||||||||| ||||||    
T  27376392 acaataagtaagtatattgaaaaactaatatgataatattaa 27376351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 38932750 - 38932798
Alignment:
Q  55 gtgacaataaataagtatattgaaagactaatatgatattattaatgaa 103  Q
    |||||||||||||||||||||||| ||||||||||| | ||||||||||    
T  38932750 gtgacaataaataagtatattgaaggactaatatgacaatattaatgaa 38932798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 99
Target Start/End: Complemental strand, 7616943 - 7616900
Alignment:
Q  56 tgacaataaataagtatattgaaagactaatatgatattattaa 99  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||    
T  7616943 tgacaataaataagtatattgaatgactaatatgataatattaa 7616900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 39331100 - 39331150
Alignment:
Q  56 tgacaataaataagtatattgaaagactaatatgatattattaatgaagca 106  Q
    |||||||||||||||||||||||||||| |||| | | |||||||||||||    
T  39331100 tgacaataaataagtatattgaaagactgatataacaatattaatgaagca 39331150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 48973337 - 48973387
Alignment:
Q  56 tgacaataaataagtatattgaaagactaatatgatattattaatgaagca 106  Q
    ||||||||| ||||||||||||| ||||||||||| | |||||||||||||    
T  48973337 tgacaataagtaagtatattgaaggactaatatgacaatattaatgaagca 48973387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 312694 - 312743
Alignment:
Q  55 gtgacaataaataagtatattgaaagactaatatgatattattaatgaag 104  Q
    |||||||||||||||||||||||| ||||||||||| | ||| |||||||    
T  312694 gtgacaataaataagtatattgaaggactaatatgacaatatcaatgaag 312743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 6552520 - 6552569
Alignment:
Q  55 gtgacaataaataagtatattgaaagactaatatgatattattaatgaag 104  Q
    |||||||||||||||||||||||| ||||||| ||| | ||| |||||||    
T  6552520 gtgacaataaataagtatattgaaggactaatgtgacaatatcaatgaag 6552569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 13834500 - 13834456
Alignment:
Q  55 gtgacaataaataagtatattgaaagactaatatgatattattaa 99  Q
    |||||||||| ||||||||||||| ||||||||||| | ||||||    
T  13834500 gtgacaataagtaagtatattgaaggactaatatgacaatattaa 13834456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 47097417 - 47097461
Alignment:
Q  56 tgacaataaataagtatattgaaagactaatatgatattattaat 100  Q
    |||||||||||||||||||| || ||||||||||| | |||||||    
T  47097417 tgacaataaataagtatattaaaggactaatatgacaatattaat 47097461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 56095193 - 56095149
Alignment:
Q  55 gtgacaataaataagtatattgaaagactaatatgatattattaa 99  Q
    |||||||||| |||||||||| |||||||||||||| | ||||||    
T  56095193 gtgacaataagtaagtatattaaaagactaatatgacaatattaa 56095149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 2540 - 2491
Alignment:
Q  55 gtgacaataaataagtatattgaaagactaatatgatattattaatgaag 104  Q
    |||||||||||||||||||||||| ||||||||||| | ||| |||||||    
T  2540 gtgacaataaataagtatattgaaggactaatatgacaatatcaatgaag 2491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 20157 - 20108
Alignment:
Q  55 gtgacaataaataagtatattgaaagactaatatgatattattaatgaag 104  Q
    |||||||||||||||||||||||| ||||||||||| | ||| |||||||    
T  20157 gtgacaataaataagtatattgaaggactaatatgacaatatcaatgaag 20108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 9023351 - 9023400
Alignment:
Q  55 gtgacaataaataagtatattgaaagactaatatgatattattaatgaag 104  Q
    |||||||||||||||||||||||| ||||||||||| | ||| |||||||    
T  9023351 gtgacaataaataagtatattgaaggactaatatgacaatatcaatgaag 9023400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 98
Target Start/End: Complemental strand, 4658477 - 4658445
Alignment:
Q  66 taagtatattgaaagactaatatgatattatta 98  Q
    |||||||||| ||||||||||||||||||||||    
T  4658477 taagtatattaaaagactaatatgatattatta 4658445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 97
Target Start/End: Complemental strand, 33584737 - 33584700
Alignment:
Q  60 aataaataagtatattgaaagactaatatgatattatt 97  Q
    |||||||||||||||||| |||||||||||||||||||    
T  33584737 aataaataagtatattgagagactaatatgatattatt 33584700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 41746499 - 41746450
Alignment:
Q  55 gtgacaataaataagtatattgaaagactaatatgatattattaatgaag 104  Q
    |||||||||||||||||||||||| | ||||||||| | |||||||||||    
T  41746499 gtgacaataaataagtatattgaagggctaatatgacaatattaatgaag 41746450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 7165737 - 7165693
Alignment:
Q  55 gtgacaataaataagtatattgaaagactaatatgatattattaa 99  Q
    |||||||||| ||||||||||||||||||||||||| | ||||||    
T  7165737 gtgacaataagtaagtatattgaaagactaatatgaaaatattaa 7165693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 17742576 - 17742620
Alignment:
Q  55 gtgacaataaataagtatattgaaagactaatatgatattattaa 99  Q
    |||||||||| |||||||||| |||||||||||||| | ||||||    
T  17742576 gtgacaataagtaagtatattaaaagactaatatgacaatattaa 17742620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 49880162 - 49880211
Alignment:
Q  55 gtgacaataaataagtatattgaaagactaatatgatattattaatgaag 104  Q
    |||||||||| ||||||||||||||||||||||||| | ||| |||||||    
T  49880162 gtgacaataagtaagtatattgaaagactaatatgacaatatcaatgaag 49880211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 99
Target Start/End: Original strand, 34826996 - 34827039
Alignment:
Q  56 tgacaataaataagtatattgaaagactaatatgatattattaa 99  Q
    ||||||||||||||||||||||| ||||||||||| | ||||||    
T  34826996 tgacaataaataagtatattgaatgactaatatgacaatattaa 34827039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 27463841 - 27463873
Alignment:
Q  56 tgacaataaataagtatattgaaagactaatat 88  Q
    ||||||||| |||||||||||||||||||||||    
T  27463841 tgacaataagtaagtatattgaaagactaatat 27463873  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 36144984 - 36145028
Alignment:
Q  56 tgacaataaataagtatattgaaagactaatatgatattattaat 100  Q
    ||||||||| |||||||||||||| |||||||||| | |||||||    
T  36144984 tgacaataactaagtatattgaaaaactaatatgacaatattaat 36145028  T

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Target: scaffold0252 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 17262 - 17213
Alignment:
Q  55 gtgacaataaataagtatattgaaagactaatatgatattattaatgaag 104  Q
    ||||||||||||||||||||||||| |||| ||||| | |||||| ||||    
T  17262 gtgacaataaataagtatattgaaatactagtatgacaatattaacgaag 17213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 35024 - 35073
Alignment:
Q  55 gtgacaataaataagtatattgaaagactaatatgatattattaatgaag 104  Q
    |||| ||||||||||||||||||| ||||||||||| | ||| |||||||    
T  35024 gtgataataaataagtatattgaaggactaatatgacaatatcaatgaag 35073  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 26293484 - 26293528
Alignment:
Q  55 gtgacaataaataagtatattgaaagactaatatgatattattaa 99  Q
    |||||||||| || |||||||||| ||||||||||||| ||||||    
T  26293484 gtgacaataagtatgtatattgaatgactaatatgataatattaa 26293528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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