View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17044_low_16 (Length: 241)
Name: NF17044_low_16
Description: NF17044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17044_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 26321071 - 26320854
Alignment:
| Q |
1 |
ccggtatcaacatacgagtctccaaaaacgaacaattcttttgtaggatattttaggtgacgactggcctcagcttgcagtcctaacaatcaacaaatgt |
100 |
Q |
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| T |
26321071 |
ccggtatcaacatacgagtctccgaaaacgaacaattcttttgttggatattttaggtgacgactggcctcagcttgcagtcctaacaatcaacaaatgt |
26320972 |
T |
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| Q |
101 |
acaattagtaagtttttgattaaccaatattaattaaggaaaatcaatgagatcaagaagttaaaataaaaggggaacgtatatattgattataagttga |
200 |
Q |
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| T |
26320971 |
a---------agtttttgattaaccaatattaattaaggaaaatcaatgagatcaagaagttaaaataaaacgggaacgtatatattgattataagttga |
26320881 |
T |
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| Q |
201 |
ttaaaattgttgcatgcggtagtagat |
227 |
Q |
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| T |
26320880 |
ttaaaattgttgcatgcggtagtagat |
26320854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 26327611 - 26327533
Alignment:
| Q |
1 |
ccggtatcaacatacgagtctccaaaaacgaacaattcttttgtaggatattttaggtgacgactggcctcagcttgca |
79 |
Q |
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| T |
26327611 |
ccggtatcaacatacgaatctccaaaaacaaacaatttttttgaaggatgattgagatggcgagtggcctcaacttgca |
26327533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 26335563 - 26335485
Alignment:
| Q |
1 |
ccggtatcaacatacgagtctccaaaaacgaacaattcttttgtaggatattttaggtgacgactggcctcagcttgca |
79 |
Q |
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||||||||||||||||||||||| ||||| ||||||| ||||| ||||| || || || ||| |||||||| |||||| |
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| T |
26335563 |
ccggtatcaacatacgagtctccgaaaacaaacaatttttttgaaggatgattgagatggcgagtggcctcaacttgca |
26335485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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