View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17044_low_20 (Length: 219)
Name: NF17044_low_20
Description: NF17044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17044_low_20 |
 | |
|
| [»] chr4 (7 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 7 - 219
Target Start/End: Complemental strand, 5174258 - 5174043
Alignment:
| Q |
7 |
attctctagaactttacccttgtaaaagtattcattgtgctttgttctaaactccacttcaaattgtagatcttctaccaatgaatttccaatccatgga |
106 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||| ||| |||||||||||||||||| |
|
|
| T |
5174258 |
attctctagaactatacccttgtaagagtattcattgtgctttgttctgaactccacttcaaattgtagttcttctttcaacgaatttccaatccatgga |
5174159 |
T |
|
| Q |
107 |
cgtggaatcaacgaactagcattgaaggaaatatctgtaggagctccgtaaattgtgaattcaaaaataggaaggtcataatcatc---atgaacatatt |
203 |
Q |
| |
|
|| |||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||| |||||| ||||||||||| |
|
|
| T |
5174158 |
tgtcgaatcaacaaactagcattgaaggaaatatctgtaggagctccgtacattgagaattcaaaaataggaccgtcatcatcatcattatgaacatatt |
5174059 |
T |
|
| Q |
204 |
gtctcattccaaatga |
219 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
5174058 |
gtctcattccaaatga |
5174043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 9 - 219
Target Start/End: Original strand, 4841266 - 4841476
Alignment:
| Q |
9 |
tctctagaactttacccttgtaaaagtattcattgtgctttgttctaaactccacttcaaattgtagatcttctaccaatgaatttccaatccatggacg |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||| | |
|
|
| T |
4841266 |
tctctagaactttacccttgtaaaagtattcattgtgctttgttctaaactccacttcaaattgtagatttt---tcaacgaatttccaatccatggatg |
4841362 |
T |
|
| Q |
109 |
tggaatcaacgaactagcattgaaggaaatatctgtaggagctccgtaaattgtgaattcaaaaataggaaggtcataatcatc---atgaacatattgt |
205 |
Q |
| |
|
| |||||||| |||||||||||||||||||| |||| |||||| ||| |||| |||||||||||||| | ||||| |||||| |||||||| |||| |
|
|
| T |
4841363 |
tcgaatcaacaaactagcattgaaggaaatagctgttggagctttgtacattgagaattcaaaaatagaaccgtcatcatcatcattatgaacatgttgt |
4841462 |
T |
|
| Q |
206 |
ctcattccaaatga |
219 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
4841463 |
ctcattccaaatga |
4841476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 4855770 - 4855844
Alignment:
| Q |
7 |
attctctagaactttacccttgtaaaagtattcattgtgctttgttctaaactccacttcaaattgtagatcttc |
81 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4855770 |
attctctagaactttacccttgtaaaagtattcatagtgctttgttctgaactccacttcaaattgtagatcttc |
4855844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 5215144 - 5215070
Alignment:
| Q |
7 |
attctctagaactttacccttgtaaaagtattcattgtgctttgttctaaactccacttcaaattgtagatcttc |
81 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
5215144 |
attctctagaactttacccttgtaaaagtattcatagtgctttgttctgaactccacctcaaattgtagatcttc |
5215070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 5196999 - 5196931
Alignment:
| Q |
7 |
attctctagaactttacccttgtaaaagtattcattgtgctttgttctaaactccacttcaaattgtag |
75 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| || ||||| |
|
|
| T |
5196999 |
attctctagaactttacccttgtaaaagtattcatagtgctttgttctgaactccacttccaaatgtag |
5196931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 5183594 - 5183513
Alignment:
| Q |
13 |
tagaactttacccttgtaaaagtattcattgtgctttgttctaaactccacttcaaattgtagatcttctaccaatgaattt |
94 |
Q |
| |
|
||||||| |||||||||||||||| |||| ||||||||||||||||| ||||||||||| ||||||||| |||| |||||| |
|
|
| T |
5183594 |
tagaactatacccttgtaaaagtaatcatagtgctttgttctaaactgcacttcaaattctagatcttcatccaacgaattt |
5183513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 5161316 - 5161249
Alignment:
| Q |
8 |
ttctctagaactttacccttgtaaaagtattcattgtgctttgttctaaactccacttcaaattgtag |
75 |
Q |
| |
|
|||||||| |||||||| ||||||||||| ||||||||||||||||| ||||||||||| || ||||| |
|
|
| T |
5161316 |
ttctctaggactttacctttgtaaaagtaatcattgtgctttgttctgaactccacttccaagtgtag |
5161249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University