View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17044_low_4 (Length: 362)
Name: NF17044_low_4
Description: NF17044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17044_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 13 - 357
Target Start/End: Original strand, 31704174 - 31704512
Alignment:
| Q |
13 |
atatttttcatgttcaacaacaggtaaaagtatataaaggagttggttggagttcagattttagtccaacgcacttcgatcgattctctccaccagactt |
112 |
Q |
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| T |
31704174 |
atatttttcatgttcaacaacaggtaaaagtatataaaggagttggttggagttcagattttagtccaacgcacttcgatcgattctctccaccagactt |
31704273 |
T |
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| Q |
113 |
ttacacaaaggtaatnnnnnnnctactcaaactcaattacaaagagagataaatcaaactagaatttgacatggactcattaatattataccacattaag |
212 |
Q |
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| T |
31704274 |
ttacacaaaggtaataaaaaaactactcaaactcaattacaaagagagataaatcaaactagaatttgacatggactc------attataccacattaag |
31704367 |
T |
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| Q |
213 |
attaaaattcaccaatttgatagcagactacatgaatctttaaccccttaatataccataatcatgaaagagatttaatatgtgacacattgaaaagtta |
312 |
Q |
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| T |
31704368 |
attaaaattcaccaatttgatagcagactacatgaatctttaaccccttaatataccataatcatgaaagagatttaatatgtgacacattgaaaagtta |
31704467 |
T |
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| Q |
313 |
cagcactgtaaattcatttggaagatcatgtgtgcctatgctact |
357 |
Q |
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| T |
31704468 |
cagtactgtaaattcatttggaagatcatgtgtgcttatgttact |
31704512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 31653991 - 31654099
Alignment:
| Q |
16 |
tttttcatgttcaacaacaggtaaaagtatataaaggagttggttggagttcagattttagtccaacgcacttcgatcgattctctccaccagactttta |
115 |
Q |
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| T |
31653991 |
ttttacatgttaaaaaacaggtcaaagtatacaaaggagttggctggaggtcagatttcagtccaacgcacttcgatcgattctctccaccagattttta |
31654090 |
T |
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| Q |
116 |
cacaaaggt |
124 |
Q |
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| T |
31654091 |
cacaaaggt |
31654099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 126
Target Start/End: Original strand, 35509810 - 35509880
Alignment:
| Q |
56 |
tggttggagttcagattttagtccaacgcacttcgatcgattctctccaccagacttttacacaaaggtaa |
126 |
Q |
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| T |
35509810 |
tggttggagcttagattttagtcccacacactttgatatgttctctcccccagacttttacacaaaggtaa |
35509880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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