View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17044_low_5 (Length: 353)
Name: NF17044_low_5
Description: NF17044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17044_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 330
Target Start/End: Complemental strand, 26134645 - 26134336
Alignment:
| Q |
19 |
agcttcattaatggattgttgctggaatctagccctctaccctgttgttgattaaataagtggttgtatagaaacgagagaatgattagttaaactatat |
118 |
Q |
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| T |
26134645 |
agctttattaatggattgttgctggaatctagccctctaccctgttgttgattaaataagtggttgtatataaacgagagaatgattagttaaactatat |
26134546 |
T |
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| Q |
119 |
gctaaactttcaactacaaattacaattcatcatccaaccagtatttctattttctaattggatagatattggcataacaagaacaattatcatatacaa |
218 |
Q |
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| T |
26134545 |
gctaaactttcaactacaaattacaattcatcatccaaccagtatttctattttctaattggatagatattggcataacaagaacaattatc--atacaa |
26134448 |
T |
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| Q |
219 |
taatagtgtaatttaagttaatatatagttattt--tnnnnnnnnttaagataatatatatagtaaacaaactataagtgataagttgatttgaaagatt |
316 |
Q |
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| T |
26134447 |
tcatagtgtaatttaagttaatatatagttatttaaaaaaaaaaattaagata--atatatagtaaacaaactataagtgataagttggtttgaaagatt |
26134350 |
T |
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| Q |
317 |
tacgaggaaaatat |
330 |
Q |
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| T |
26134349 |
tatgaggaaaatat |
26134336 |
T |
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