View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17044_low_6 (Length: 347)
Name: NF17044_low_6
Description: NF17044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17044_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 9 - 329
Target Start/End: Complemental strand, 7031247 - 7030927
Alignment:
| Q |
9 |
tccaagaatatattcttttcatgagaatcaagattagtgtatatcaatctaaatacaacatggacattttcaatctgctctattttcagaatctttgcct |
108 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7031247 |
tccaataatatattcttttcatgagaatcaagattagtgtatatcaatctaaatacaacatggacattttcaatctgctctattttcagaatctttgcct |
7031148 |
T |
|
| Q |
109 |
ggctttcccatatgtccttatctttcccacaaagaaggttagctaaagctttaagaactagtggaacacctgcggtataatccaccatcttctttgatag |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7031147 |
ggctttcccatatgtccttatctttcccacaaagaaggttagctaaagctttaagaactagtggaacacctgcggtataatcgaccatcttctttgatag |
7031048 |
T |
|
| Q |
209 |
ctcatagtactccatttcgagatgctcatgtttagtaaaggcgtgcaaattgaaaagctgaaaagattcagcagagtccaatggctcaacctcgtatata |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7031047 |
ctcatagtactccatttcgagatgctcatgtttagtaaaggcgtgcaaattgaaaagctgaaaagattcagcagagtccaatggctcaacctcgtatata |
7030948 |
T |
|
| Q |
309 |
tcatcaacttttccagcaagt |
329 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
7030947 |
tcatcaacttttccagcaagt |
7030927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 6 - 329
Target Start/End: Complemental strand, 7036959 - 7036636
Alignment:
| Q |
6 |
atgtccaagaatatattcttttcatgagaatcaagattagtgtatatcaatctaaatacaacatggacattttcaatctgctctattttcagaatctttg |
105 |
Q |
| |
|
||||| ||||||||| ||||||||| | |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||| || ||| |
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| T |
7036959 |
atgtctaagaatataatcttttcataataatcaagattagtgtatatcaatctaaaaacatcatggacattttcaatctgctctattttaagattccttg |
7036860 |
T |
|
| Q |
106 |
cctggctttcccatatgtccttatctttcccacaaagaaggttagctaaagctttaagaactagtggaacacctgcggtataatccaccatcttctttga |
205 |
Q |
| |
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||| ||||||||||| | ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| |
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| T |
7036859 |
attgggtttcccatatggctttatctttcccacgaagaaggttagctaaagctttaagaaccagtggaacacctgcggtataatcaaccatattctttga |
7036760 |
T |
|
| Q |
206 |
tagctcatagtactccatttcgagatgctcatgtttagtaaaggcgtgcaaattgaaaagctgaaaagattcagcagagtccaatggctcaacctcgtat |
305 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7036759 |
tagctaatagtactccatttcgagatgctcatgtttagtaaaggcgtaaaaattgaaaagctgaaaagattcagcagagtccaatggctcaacctcgtat |
7036660 |
T |
|
| Q |
306 |
atatcatcaacttttccagcaagt |
329 |
Q |
| |
|
|||||||||| ||||||||||||| |
|
|
| T |
7036659 |
atatcatcaaattttccagcaagt |
7036636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 6 - 329
Target Start/End: Original strand, 7075003 - 7075326
Alignment:
| Q |
6 |
atgtccaagaatatattcttttcatgagaatcaagattagtgtatatcaatctaaatacaacatggacattttcaatctgctctattttcagaatctttg |
105 |
Q |
| |
|
||||| |||||||| ||||||||| | |||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||| ||| || ||| |
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|
| T |
7075003 |
atgtctaagaatatgatcttttcataataatcaagattagtgtatatcaatctaaaaacatcgtggacattttcaatctgctctattttaagattccttg |
7075102 |
T |
|
| Q |
106 |
cctggctttcccatatgtccttatctttcccacaaagaaggttagctaaagctttaagaactagtggaacacctgcggtataatccaccatcttctttga |
205 |
Q |
| |
|
||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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|
| T |
7075103 |
attggctttcccatatggctttatctttcccacgaagaaggttagctaaagctttaagaaccagtggaacacctgcggtataatccaccattttctttga |
7075202 |
T |
|
| Q |
206 |
tagctcatagtactccatttcgagatgctcatgtttagtaaaggcgtgcaaattgaaaagctgaaaagattcagcagagtccaatggctcaacctcgtat |
305 |
Q |
| |
|
||||| ||||||||||||||| ||||||| |||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || ||| |
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|
| T |
7075203 |
tagcttatagtactccatttcaagatgcttttgtttattaaaggcatgcaagttgaaaagctgaaaagattcagcagagtccaatggctcaacttcatat |
7075302 |
T |
|
| Q |
306 |
atatcatcaacttttccagcaagt |
329 |
Q |
| |
|
||||||||||||||||||| |||| |
|
|
| T |
7075303 |
atatcatcaacttttccagaaagt |
7075326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 9 - 312
Target Start/End: Complemental strand, 7023858 - 7023555
Alignment:
| Q |
9 |
tccaagaatatattcttttcatgagaatcaagattagtgtatatcaatctaaatacaacatggacattttcaatctgctctattttcagaatctttgcct |
108 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||| ||||||||| ||||| |||||||| || | ||||| ||||||| | | || |||| |
|
|
| T |
7023858 |
tccaaaaatatattcttttcatgataatcaagattagtgtacatcaatctagatacatcatggacagttctagtctgccctattttgatattccttgcta |
7023759 |
T |
|
| Q |
109 |
ggctttcccatatgtccttatctttcccacaaagaaggttagctaaagctttaagaactagtggaacacctgcggtataatccaccatcttctttgatag |
208 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||| ||| |||||| | |||||||| ||||||||||| | | | ||| |||||| ||| ||||| |
|
|
| T |
7023758 |
ggctttcccatatggctttatctttcccacaaagatacttacctaaagttgtaagaacttgtggaacaccttcagcaagatcgaccatcctctccgatag |
7023659 |
T |
|
| Q |
209 |
ctcatagtactccatttcgagatgctcatgtttagtaaaggcgtgcaaattgaaaagctgaaaagattcagcagagtccaatggctcaacctcgtatata |
308 |
Q |
| |
|
|||| |||||||||||| ||||| |||||||| |||||| ||||||||||||||| ||| |||||| ||||||||||||| | ||||| |||| || |
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|
| T |
7023658 |
ctcacggtactccatttcattatgcttatgtttagcaaaggcatgcaaattgaaaagcagaagtgattcaacagagtccaatggttgaaccttgtatgta |
7023559 |
T |
|
| Q |
309 |
tcat |
312 |
Q |
| |
|
|||| |
|
|
| T |
7023558 |
tcat |
7023555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 232
Target Start/End: Complemental strand, 3955997 - 3955888
Alignment:
| Q |
123 |
tccttatctttcccacaaagaaggttagctaaagctttaagaactagtggaacacctgcggtataatccaccatcttctttgatagctcatagtactcca |
222 |
Q |
| |
|
||||| ||||| |||| ||| || | ||| ||| |||||||||||| ||||| ||| || |||||| | || ||||||||| |||||||||||||||| |
|
|
| T |
3955997 |
tccttgtcttttccacgaagcagatgagccaaaactttaagaactaatggaattcctttggcataatcgatcaccttctttgaaagctcatagtactcca |
3955898 |
T |
|
| Q |
223 |
tttcgagatg |
232 |
Q |
| |
|
|||| ||||| |
|
|
| T |
3955897 |
tttcaagatg |
3955888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 3801235 - 3801304
Alignment:
| Q |
157 |
ctttaagaactagtggaacacctgcggtataatccaccatcttctttgatagctcatagtactccatttc |
226 |
Q |
| |
|
|||||||||||| |||||| ||| || ||| || | || | |||||||||||||||||||||||||||| |
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|
| T |
3801235 |
ctttaagaactaatggaactcctttggcatattcgatcaccctctttgatagctcatagtactccatttc |
3801304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 232
Target Start/End: Original strand, 3817287 - 3817320
Alignment:
| Q |
199 |
tctttgatagctcatagtactccatttcgagatg |
232 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
3817287 |
tctttgatagctcatagtactccatttcaagatg |
3817320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 3920219 - 3920150
Alignment:
| Q |
157 |
ctttaagaactagtggaacacctgcggtataatccaccatcttctttgatagctcatagtactccatttc |
226 |
Q |
| |
|
|||||||||||| |||||| ||| || ||| || | || | |||||||||||||||||||||||||||| |
|
|
| T |
3920219 |
ctttaagaactaatggaactcctttggcatattcgatcaccctctttgatagctcatagtactccatttc |
3920150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 232
Target Start/End: Original strand, 4001995 - 4002028
Alignment:
| Q |
199 |
tctttgatagctcatagtactccatttcgagatg |
232 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
4001995 |
tctttgatagctcatagtactccatttcaagatg |
4002028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 232
Target Start/End: Original strand, 4009611 - 4009720
Alignment:
| Q |
123 |
tccttatctttcccacaaagaaggttagctaaagctttaagaactagtggaacacctgcggtataatccaccatcttctttgatagctcatagtactcca |
222 |
Q |
| |
|
||||| ||||| |||| ||| || | ||| ||| ||| |||||||| ||||| ||| || |||||| |||| ||||||||||| ||||||||||||| |
|
|
| T |
4009611 |
tccttgtcttttccacgaagtagatgagccaaaacttcaagaactaatggaattcctttggcataatcgaccactttctttgatagatcatagtactcca |
4009710 |
T |
|
| Q |
223 |
tttcgagatg |
232 |
Q |
| |
|
|||| ||||| |
|
|
| T |
4009711 |
tttcaagatg |
4009720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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