View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17044_low_9 (Length: 305)

Name: NF17044_low_9
Description: NF17044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17044_low_9
NF17044_low_9
[»] chr2 (4 HSPs)
chr2 (169-305)||(12183405-12183541)
chr2 (13-100)||(12183249-12183336)
chr2 (48-90)||(19580954-19580996)
chr2 (48-90)||(27024091-27024133)
[»] scaffold0018 (1 HSPs)
scaffold0018 (48-86)||(137010-137048)
[»] chr3 (3 HSPs)
chr3 (51-91)||(40797152-40797192)
chr3 (51-90)||(22844172-22844211)
chr3 (51-88)||(913271-913308)
[»] chr8 (2 HSPs)
chr8 (30-73)||(36555962-36556005)
chr8 (21-90)||(27534337-27534406)
[»] chr4 (1 HSPs)
chr4 (51-86)||(35658485-35658520)
[»] chr1 (4 HSPs)
chr1 (51-86)||(27469663-27469698)
chr1 (47-90)||(52752143-52752186)
chr1 (33-91)||(2875503-2875561)
chr1 (53-90)||(26199700-26199737)
[»] chr6 (1 HSPs)
chr6 (21-73)||(34020742-34020792)
[»] chr5 (2 HSPs)
chr5 (19-72)||(8957344-8957397)
chr5 (46-82)||(31645957-31645993)


Alignment Details
Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 169 - 305
Target Start/End: Original strand, 12183405 - 12183541
Alignment:
Q  169 gatttgagggatgaataagaagaactaggttttaggacaaaattaaatcaaattttaaacttatttaannnnnnnaataacatgtctactaaaataaatg 268  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||    
T  12183405 gatttgagggatgaataagaagaactaggatttaggacaaaattaaatcaaattttaaacttatttaattttgttaataacatgtctactaaaataaatg 12183504  T
Q  269 acacaatcctaattaatgcatgtactgtttaacatgt 305  Q
    |||||||||||||||||||||||||||||||||||||    
T  12183505 acacaatcctaattaatgcatgtactgtttaacatgt 12183541  T

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Target: chr2; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 12183249 - 12183336
Alignment:
Q  13 aatataaactgaacaagcacctgaacaagacggggaaaacaaacaacgtcgcacaaagacggtgaacaaaacaatgtctaagatgacg 100  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  12183249 aatatgaactgaacaagcacctaaacaagacggggaaaacaaacaacgtcgcacaaagatggtgaacaaaataatgtctaagatgacg 12183336  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 19580954 - 19580996
Alignment:
Q  48 aaaacaaacaacgtcgcacaaagacggtgaacaaaacaatgtc 90  Q
    ||||||||||||||||||||||||||  |||||||||||||||    
T  19580954 aaaacaaacaacgtcgcacaaagacgacgaacaaaacaatgtc 19580996  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 27024091 - 27024133
Alignment:
Q  48 aaaacaaacaacgtcgcacaaagacggtgaacaaaacaatgtc 90  Q
    ||||||||||||||||||||||||||  ||||||| |||||||    
T  27024091 aaaacaaacaacgtcgcacaaagacgacgaacaaaccaatgtc 27024133  T

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Target: scaffold0018 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 86
Target Start/End: Original strand, 137010 - 137048
Alignment:
Q  48 aaaacaaacaacgtcgcacaaagacggtgaacaaaacaa 86  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  137010 aaaacaaacaacgtcgcacaaagacgatgaacaaaacaa 137048  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 40797192 - 40797152
Alignment:
Q  51 acaaacaacgtcgcacaaagacggtgaacaaaacaatgtct 91  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  40797192 acaaacaacgtcgcacaaagacgacgaacaaaacaatgtct 40797152  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 90
Target Start/End: Complemental strand, 22844211 - 22844172
Alignment:
Q  51 acaaacaacgtcgcacaaagacggtgaacaaaacaatgtc 90  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  22844211 acaaacaacgtcgcacaaagacgacgaacaaaacaatgtc 22844172  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 913271 - 913308
Alignment:
Q  51 acaaacaacgtcgcacaaagacggtgaacaaaacaatg 88  Q
    |||||||||||||||||||||||  |||||||||||||    
T  913271 acaaacaacgtcgcacaaagacgacgaacaaaacaatg 913308  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 36555962 - 36556005
Alignment:
Q  30 cacctgaacaagacggggaaaacaaacaacgtcgcacaaagacg 73  Q
    ||||||||||||||||| |||||||||||  |||||||||||||    
T  36555962 cacctgaacaagacgggaaaaacaaacaatttcgcacaaagacg 36556005  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 27534337 - 27534406
Alignment:
Q  21 ctgaacaagcacctgaacaagacggggaaaacaaacaacgtcgcacaaagacggtgaacaaaacaatgtc 90  Q
    |||||||| ||||| ||||||| ||  || |||||||||| ||||||||||||   ||||||||||||||    
T  27534337 ctgaacaaacacctaaacaagagggaaaacacaaacaacgccgcacaaagacgacaaacaaaacaatgtc 27534406  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 86
Target Start/End: Original strand, 35658485 - 35658520
Alignment:
Q  51 acaaacaacgtcgcacaaagacggtgaacaaaacaa 86  Q
    ||||||||||||||||||||||||| ||||||||||    
T  35658485 acaaacaacgtcgcacaaagacggtaaacaaaacaa 35658520  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 86
Target Start/End: Original strand, 27469663 - 27469698
Alignment:
Q  51 acaaacaacgtcgcacaaagacggtgaacaaaacaa 86  Q
    ||||||||||||||||||||||| ||||||||||||    
T  27469663 acaaacaacgtcgcacaaagacgatgaacaaaacaa 27469698  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 52752186 - 52752143
Alignment:
Q  47 gaaaacaaacaacgtcgcacaaagacggtgaacaaaacaatgtc 90  Q
    |||||||||||||||||||||||||||  ||||||| |||||||    
T  52752186 gaaaacaaacaacgtcgcacaaagacgacgaacaaaccaatgtc 52752143  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 2875503 - 2875561
Alignment:
Q  33 ctgaacaagacggggaaaacaaacaacgtcgcacaaagacggtgaacaaaacaatgtct 91  Q
    |||||||||||||| || ||||||||| ||||| ||||||||  | |||||||||||||    
T  2875503 ctgaacaagacgggaaagacaaacaacatcgcagaaagacggcaagcaaaacaatgtct 2875561  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 90
Target Start/End: Complemental strand, 26199737 - 26199700
Alignment:
Q  53 aaacaacgtcgcacaaagacggtgaacaaaacaatgtc 90  Q
    |||||||||||||||||||||  |||||||||||||||    
T  26199737 aaacaacgtcgcacaaagacgacgaacaaaacaatgtc 26199700  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 34020792 - 34020742
Alignment:
Q  21 ctgaacaagcacctgaacaagacggggaaaacaaacaacgtcgcacaaagacg 73  Q
    |||||||| |||||||||||||  || |||||||||||||||| |||||||||    
T  34020792 ctgaacaaacacctgaacaaga--ggaaaaacaaacaacgtcgtacaaagacg 34020742  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 8957397 - 8957344
Alignment:
Q  19 aactgaacaagcacctgaacaagacggggaaaacaaacaacgtcgcacaaagac 72  Q
    |||||||||| |||||||||||||  |  || ||||||||||||||||||||||    
T  8957397 aactgaacaaacacctgaacaagagagaaaagacaaacaacgtcgcacaaagac 8957344  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 31645993 - 31645957
Alignment:
Q  46 ggaaaacaaacaacgtcgcacaaagacggtgaacaaa 82  Q
    ||||||||||||||||||||||||||||  |||||||    
T  31645993 ggaaaacaaacaacgtcgcacaaagacgacgaacaaa 31645957  T

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