View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17045_high_3 (Length: 467)

Name: NF17045_high_3
Description: NF17045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17045_high_3
NF17045_high_3
[»] chr6 (1 HSPs)
chr6 (1-467)||(28745247-28745713)


Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Original strand, 28745247 - 28745713
Alignment:
Q  1 caactgagttaagctcacaatgacgatttattttacctctatctaaatattgaacatatttaattgatattcatatgttagttttatttgcttttcatta 100  Q
    ||||||| |||||||||| ||||||  |||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28745247 caactgaattaagctcacgatgacggcttattttatctctatctaaatgttgaacatatttaattgatattcatatgttatttttatttgcttttcatta 28745346  T
Q  101 cannnnnnnnnnnnatttctagaagtcccatattaaagaatttacacgcaacactattgattacaaattggaggtaggactcccgatggtgcatatttgg 200  Q
    |             |||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||| ||    
T  28745347 cgtttttttattttatttctagaagtcccatattaaagaatttacatgcaacactagtaattacaaattggaggtaggactcccgatggtgcatattggg 28745446  T
Q  201 gtacacagttttgtaaacaggtgatgacgtactcgatatgaccaacacacgttcgacgtcgtccgatcaagcctagtcgtgtggtgtattattttttagt 300  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||    
T  28745447 gtacacagttttgtaaacaggtgacgacgtactcaatatgaccaacacacgttcgaggtcgtccggtcaagcctagtcatgtggtgtattattttttagt 28745546  T
Q  301 ggcccaaagccgtaaattaattaattctttggaaattttgttttggtaacatcatcgttcagtgttttgcacgcgtcaacatgcgtttggcacactccaa 400  Q
    || |||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  28745547 ggtccaaagccgtaaattatttaattctttggaaattttgctttggtaacgtcatcgttcagggttttgcacgcgtcaacacgcgtttggcacactccaa 28745646  T
Q  401 taagtgctgaacacatgtttgtgcgcaccctcctctagtcaactcttgttcgcgttctctttgatga 467  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28745647 tgagtgctgaacacatgtttgtgcgcaccctcctctagtcaactcttgttcgcgttctcttttatga 28745713  T

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