View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17045_high_5 (Length: 454)
Name: NF17045_high_5
Description: NF17045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17045_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 10 - 438
Target Start/End: Complemental strand, 39522146 - 39521718
Alignment:
| Q |
10 |
atcatcaatttcataacttnnnnnnnntcatcaaacaaacacaattttcctctctcactatgtcaacctttcacttccacacaattcaacgctctatctt |
109 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
39522146 |
atcatcaatttcataacttaaaaaaaatcatcaaacaaacacaattttcctctctcaccatgtcaacctttcacttccacacaattcaacgctctatctt |
39522047 |
T |
|
| Q |
110 |
tctacttgcnnnnnnncttcaattctcatcattacaattcccctcactcggatacgatcctcaagacacatacttcatcaattgtggatcagatgtcgac |
209 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39522046 |
tctccttgctttttttcttcaattctcatcattacaattcccctcactcggatacgatcctcaagacacatacttcatcaattgtggatcagatatcgac |
39521947 |
T |
|
| Q |
210 |
gtggatgaaaataacaaccattatattggtgaatcaaaccatgcttacccgaaaaaattattcagcgaaagtaactccaacgtaacaagtcaatcaccag |
309 |
Q |
| |
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||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
39521946 |
gtgaatgaaaataacaacctttatattggtgaatcaaaccatgcttacccgaaaaaattattcagcgaaagtaactccaaagtaacaagtcaatcaccag |
39521847 |
T |
|
| Q |
310 |
tgtcttcacctctcaaccaaacagcaagaattttcctttccaattcttcctatgaattcaaaaccgttccaaacaacacttacatggtacgttttcattt |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
39521846 |
tgtcttcacctctcaaccaaacagcaagaattttcctttccaattcttcctatgaattcaaaaccgttccaagcaacacttacatggtacgtttccattt |
39521747 |
T |
|
| Q |
410 |
cttttcattctcttcaccaactaaccttt |
438 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
39521746 |
cttttcattctcttcaccaactaaccttt |
39521718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 126 - 438
Target Start/End: Complemental strand, 39544820 - 39544511
Alignment:
| Q |
126 |
cttcaattctcatcattacaattcccctcactcggatacgatcctcaagacacatacttcatcaattgtggatcagatgtcgacgtggatgaaaataaca |
225 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||| | |||||| |||||||||||| |
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|
| T |
39544820 |
cttcaattcgcatcattacaatttccctcactcggatacgatcaccaagacacatacttcatcaattgcggatcagatattgacgtgaatgaaaataaca |
39544721 |
T |
|
| Q |
226 |
accattatattggtgaatcaaaccatgcttacccgaaaaaattattcagcgaaagtaactccaacgtaacaagtcaatcaccagtgtcttcacctctcaa |
325 |
Q |
| |
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||| |||||||||||||||||||| | ||||||| |||| | ||||| |||| |||||| |||||||||||||||||||||| |||||||||| | |
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| T |
39544720 |
acctttatattggtgaatcaaaccctacttacccaaaaacaagtttcagaaaaag---ctccaaagtaacaagtcaatcaccagtgttttcacctctcta |
39544624 |
T |
|
| Q |
326 |
ccaaacagcaagaattttcctttccaattcttcctatgaattcaaaaccgttccaaacaacacttacatggtacgttttcatttcttttcattctcttca |
425 |
Q |
| |
|
|||||||||||| || |||| |||| | |||||||||||||| ||| | ||||||||||| ||||||||| |||| ||||||||||||||||||||| |
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|
| T |
39544623 |
ccaaacagcaaggatattccattccgagtcttcctatgaattttctaccataccaaacaacacctacatggtatgtttccatttcttttcattctcttca |
39544524 |
T |
|
| Q |
426 |
ccaactaaccttt |
438 |
Q |
| |
|
||||||||||||| |
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|
| T |
39544523 |
ccaactaaccttt |
39544511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 126 - 438
Target Start/End: Complemental strand, 39576675 - 39576363
Alignment:
| Q |
126 |
cttcaattctcatcattacaattcccctcactcggatacgatcctcaagacacatacttcatcaattgtggatcagatgtcgacgtggatgaaaataaca |
225 |
Q |
| |
|
||||||||||||||| |||| ||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||| |||||||||| | |
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|
| T |
39576675 |
cttcaattctcatcactacacttccctgcactcggatacgatcatcaagagacatacttcatcaattgtggatcagatatcgacgtgaatgaaaataaga |
39576576 |
T |
|
| Q |
226 |
accattatattggtgaatcaaaccatgcttacccgaaaaaattattcagcgaaagtaactccaacgtaacaagtcaatcaccagtgtcttcacctctcaa |
325 |
Q |
| |
|
| | |||||||||||||||||||||||||||||| ||||||| ||||||| |||| | |||| | ||| | || |||| |||||||||||||||| | |
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|
| T |
39576575 |
atctttatattggtgaatcaaaccatgcttaccctaaaaaatcattcagccaaagaagttccatagaaaccaatccatcatcagtgtcttcacctcttta |
39576476 |
T |
|
| Q |
326 |
ccaaacagcaagaattttcctttccaattcttcctatgaattcaaaaccgttccaaacaacacttacatggtacgttttcatttcttttcattctcttca |
425 |
Q |
| |
|
|||||||||||||||||||| ||| | || ||||| ||||| ||| | |||||||||||||| ||||||||||| | ||||||||||||||||||| |
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|
| T |
39576475 |
ccaaacagcaagaattttccattctgaatcctcctacgaattttctaccataccaaacaacacttatatggtacgtttccgtttcttttcattctcttca |
39576376 |
T |
|
| Q |
426 |
ccaactaaccttt |
438 |
Q |
| |
|
|||||||| |||| |
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|
| T |
39576375 |
ccaactaaacttt |
39576363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 126 - 438
Target Start/End: Complemental strand, 39581216 - 39580892
Alignment:
| Q |
126 |
cttcaattctcatcattacaattcccctcactcggat---acgatcctcaagacacatacttcatcaattgtggatcagatgtcgacgtggatgaaaata |
222 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||| | |||| ||| ||||||||||||||||||| ||||||||| | || || ||||| || |
|
|
| T |
39581216 |
cttcaattctcatcattacaattttcctcgctcggattatataatccccaacacacatacttcatcaattgcggatcagattttgatgttactgaaagta |
39581117 |
T |
|
| Q |
223 |
acaaccattatattggtgaatcaaaccatgcttacccgaaaaaattattcagcgaaagtaactccaacgtaacaagtcaatcaccag---tgtc------ |
313 |
Q |
| |
|
||||| |||||||||||||||||||| | |||| ||||||| | | |||||| |||| |||||| ||||||||||||||| || | || |
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|
| T |
39581116 |
acaacgtttatattggtgaatcaaaccctacttatccgaaaacagttttcagcaaaag---ctccaaagtaacaagtcaatcatcatcactatcaacacc |
39581020 |
T |
|
| Q |
314 |
---ttcacctctcaaccaaacagcaagaattttcctttccaattcttcctatgaattcaaaaccgttccaaacaacacttacatggtacgttttcatttc |
410 |
Q |
| |
|
|||||||||| |||||||||||| || |||| |||||| |||| ||| |||||||||||||| |||||||||||||||||||||||||| |||||| |
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|
| T |
39581019 |
actttcacctctctaccaaacagcaattatattcccttccaaatctttctacgaattcaaaaccgtaccaaacaacacttacatggtacgtttccatttc |
39580920 |
T |
|
| Q |
411 |
ttttcattctcttcaccaactaaccttt |
438 |
Q |
| |
|
||| |||||||| ||||||||| |||| |
|
|
| T |
39580919 |
tttctattctctttaccaactaatcttt |
39580892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 297 - 438
Target Start/End: Complemental strand, 39525356 - 39525215
Alignment:
| Q |
297 |
agtcaatcaccagtgtcttcacctctcaaccaaacagcaagaattttcctttccaattcttcctatgaattcaaaaccgttccaaacaacacttacatgg |
396 |
Q |
| |
|
||||||||| ||||| ||||||||||| ||||||||||||| || || | |||| | |||| || || ||||||||||| ||||||||||| ||||||| |
|
|
| T |
39525356 |
agtcaatcatcagtgccttcacctctctaccaaacagcaaggatatttcattccgaatctttatacgagttcaaaaccgtaccaaacaacacctacatgg |
39525257 |
T |
|
| Q |
397 |
tacgttttcatttcttttcattctcttcaccaactaaccttt |
438 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||| |
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|
| T |
39525256 |
tacgtttccatttcttttcattctcttcaccacttaaccttt |
39525215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 293 - 438
Target Start/End: Complemental strand, 39511617 - 39511472
Alignment:
| Q |
293 |
aacaagtcaatcaccagtgtcttcacctctcaaccaaacagcaagaattttcctttccaattcttcctatgaattcaaaaccgttccaaacaacacttac |
392 |
Q |
| |
|
||||| ||||||| |||| ||||| ||||| ||||||| ||||| ||||||| |||| | |||| || |||||||||||| | ||||||||||| || |
|
|
| T |
39511617 |
aacaaatcaatcatcagttccttcatctctctaccaaactgcaaggattttccgttccgaatcttggtacgaattcaaaaccatcccaaacaacacctat |
39511518 |
T |
|
| Q |
393 |
atggtacgttttcatttcttttcattctcttcaccaactaaccttt |
438 |
Q |
| |
|
||||||||||| |||||| ||||||||||| |||||||||| |||| |
|
|
| T |
39511517 |
atggtacgtttccatttcctttcattctctacaccaactaaacttt |
39511472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 127 - 203
Target Start/End: Complemental strand, 39525529 - 39525453
Alignment:
| Q |
127 |
ttcaattctcatcattacaattcccctcactcggatacgatcctcaagacacatacttcatcaattgtggatcagat |
203 |
Q |
| |
|
||||||||||||||||| | |||||||| |||||||||||| ||||||| ||||||||||| ||||||||||||| |
|
|
| T |
39525529 |
ttcaattctcatcattatacttcccctcgctcggatacgatgaacaagacatatacttcatcagttgtggatcagat |
39525453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 126 - 203
Target Start/End: Complemental strand, 39581927 - 39581850
Alignment:
| Q |
126 |
cttcaattctcatcattacaattcccctcactcggatacgatcctcaagacacatacttcatcaattgtggatcagat |
203 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| ||||||||| ||||||| ||||||||||| |||||||| |||| |
|
|
| T |
39581927 |
cttcaattctcatcattacagttcgcctcacttggatacgatgaccaagacatatacttcatcagttgtggataagat |
39581850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 378 - 438
Target Start/End: Original strand, 3331509 - 3331569
Alignment:
| Q |
378 |
ccaaacaacacttacatggtacgttttcatttcttttcattctcttcaccaactaaccttt |
438 |
Q |
| |
|
||||||||||| |||||||||||||| |||||| |||||||||||||||||| |||||||| |
|
|
| T |
3331509 |
ccaaacaacacctacatggtacgtttccatttcctttcattctcttcaccaattaaccttt |
3331569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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