View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17045_high_7 (Length: 387)
Name: NF17045_high_7
Description: NF17045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17045_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 163; Significance: 6e-87; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 156 - 371
Target Start/End: Complemental strand, 238813 - 238598
Alignment:
| Q |
156 |
aaaatacaattatgtgtcatgtgtttaactttattctacgtaccaagcatgccaaaggtaaaagccaaagtgttgtgactaatggccatgtttttgactt |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
238813 |
aaaatacaattatgtgtcatgtgtttaactttatgctacgtaccaagcatgccaaaggtaaaagccaaagtgttgtgactaatggccatgtttttgactt |
238714 |
T |
|
| Q |
256 |
cagcaacaacaacaacaactacacaaaatattagagggtgcagtgcaggnnnnnnnnnnnnnnnaactatattcttccaaactcaaaccttaaaacacgt |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
238713 |
cagcaacaacaacaacaactacacaaaatattagagggtgcagtgcagggagagagaggagagaaactatattcttccaaactcaaaccctaaaacacgt |
238614 |
T |
|
| Q |
356 |
gcatgcagttattatt |
371 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
238613 |
gcatgcagttattatt |
238598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 239023 - 238909
Alignment:
| Q |
1 |
cgaaatgacgttacctgtacatatgtatataaaaggttaaaagtgtttatgtgtgaaaaatgtggtagtaaggtgctaaaatgaagtgggattaacctat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
239023 |
cgaaatgacgttacctgtacatatgtatataaaaggttaaaagtgtttatgtgtgaaaaatgtggtagtaaggtgctaaaatgaagtgggattaacctat |
238924 |
T |
|
| Q |
101 |
atgcattgattttta |
115 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
238923 |
atgcattgatattta |
238909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 196 - 247
Target Start/End: Complemental strand, 224817 - 224766
Alignment:
| Q |
196 |
taccaagcatgccaaaggtaaaagccaaagtgttgtgactaatggccatgtt |
247 |
Q |
| |
|
|||| ||||||||||||| ||| ||||||||||||||||| || |||||||| |
|
|
| T |
224817 |
tacctagcatgccaaaggcaaatgccaaagtgttgtgactgattgccatgtt |
224766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University