View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17045_low_1 (Length: 488)
Name: NF17045_low_1
Description: NF17045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17045_low_1 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 153 - 488
Target Start/End: Complemental strand, 239341 - 239006
Alignment:
| Q |
153 |
cccttgcatcccttggtgcatatatgatgtacaatatgatgtagatggtctctaccacacatccaaatgagtttatggtaatgaggagaaaagcatcttt |
252 |
Q |
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| T |
239341 |
cccttgcatcccttggtgcatagatgatgtacaatatgatgtagatggtctctaccacacatccaaatgagtttatggtaatgaggagaaaagcatcttt |
239242 |
T |
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| Q |
253 |
tttgagcaatgcatagtacaaccaaagcatggagctgaacaaagctactaggtaaggtagtgactgaaaaccctctgacgacttcttcatgaatatacgg |
352 |
Q |
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| T |
239241 |
tttgagcaatgcatagtacaaccaaagcatggagctgaacaaagctactaggtaaggtagtgactgaaaaccctctgtcgatttcttcttgtatatacgg |
239142 |
T |
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| Q |
353 |
taaaatgttgatctgcaagttaaattaattattattttttaattttactaatgaaagcataatgttaattgatacatacttaaataaatacttacattgg |
452 |
Q |
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| T |
239141 |
taaaatgttgatctgcaagttaaattaattattattttttaattttactaatgaaagcataatgttaattgatacatacttaaataaatacttacattgg |
239042 |
T |
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| Q |
453 |
agccaagaataccaagaacgaaatgacgttacctgt |
488 |
Q |
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| T |
239041 |
agccaagaataccaagaacgaaatgacgttacctgt |
239006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 153 - 362
Target Start/End: Complemental strand, 225324 - 225115
Alignment:
| Q |
153 |
cccttgcatcccttggt-gcatatatgatgtacaatatgatgtagatggtctctaccacacatccaaatgagtttatggtaatgaggagaaaagcatctt |
251 |
Q |
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| T |
225324 |
cccttgcatcc-ttggtcgcatagattatgtacaagatgatgtaaatgagctctacgacgcacccaaaagagttaatggtaataaggagaaattcatctt |
225226 |
T |
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| Q |
252 |
ttttgagcaatgcatagtacaaccaaagcatggagctgaacaaagctactaggtaaggtagtgactgaaaaccctctgacgacttcttcatgaatatacg |
351 |
Q |
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| T |
225225 |
ttttgaggaatgcataatacaaccacagcatggaactgaatagtgccactagataaggtagtgactgaaaaccctctgttgattttttcttgtagatccg |
225126 |
T |
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| Q |
352 |
gtaaaatgttg |
362 |
Q |
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| T |
225125 |
gtaaaatgttg |
225115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 239484 - 239432
Alignment:
| Q |
11 |
aagcataggaccccacattcattgccgaaagtaacttgaaagttaagttctac |
63 |
Q |
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| T |
239484 |
aagcaaaggaccccacattcattgccgaaagtaacttgaaagttaagttctac |
239432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 488
Target Start/End: Complemental strand, 225013 - 224965
Alignment:
| Q |
440 |
atacttacattggagccaagaataccaagaacgaaatgacgttacctgt |
488 |
Q |
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| T |
225013 |
atacttacattggagccaaaaataccatgaaggaaatgacattacctgt |
224965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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