View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17045_low_11 (Length: 352)
Name: NF17045_low_11
Description: NF17045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17045_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 10 - 334
Target Start/End: Original strand, 17593653 - 17593977
Alignment:
| Q |
10 |
tccaagaatatttatttgacatgatttgattgatctagtgtaaaaaagttacacagtcagtacataaaaattaatctccatttcttttttacataatcaa |
109 |
Q |
| |
|
||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
17593653 |
tccaaaaatatttatttgacctcatttgattgatctagtgtaaaaaagttacacagtcagtacataaaaattaatctctatttcttttttacataatcaa |
17593752 |
T |
|
| Q |
110 |
atacctaacatgaaaatagctaggttgacaggtcgtgacccttatagtaataacagctaataattaactaattataaaaatgtatcaagaagctagatga |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17593753 |
atacctaacatgaaaatagctaggttgacaggttgtgacccttatagtaataacagttaataattaactaattataaaaatgtatcaagaagctagatga |
17593852 |
T |
|
| Q |
210 |
caataaaattttctaataatagaagagaatgtaacgaattcagttaaagaattacaagctttttccatgaaattttaagaaaaggaaataaaacacagaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17593853 |
caataaaattttctaataatagaagagaatgtaacgaattcagttaaagaattacaagctttttccatgaaattttaagaaaaggaaataaaacacagaa |
17593952 |
T |
|
| Q |
310 |
tatcaagatttttgaggcatatcat |
334 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
17593953 |
tatcaagatttttgaggcatatcat |
17593977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 193 - 334
Target Start/End: Complemental strand, 42111900 - 42111760
Alignment:
| Q |
193 |
atcaagaagctagatgacaataaaattttctaataatagaagagaatgtaacgaattcagttaaagaattacaagctttttccatgaaattttaagaaaa |
292 |
Q |
| |
|
||||||||||| |||||||| || ||||||||||||||||||||| ||||||||| ||| ||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
42111900 |
atcaagaagctggatgacaacaagattttctaataatagaagaga-tgtaacgaaatcaattaaagaattacaagctctttccatgagattttaagaaat |
42111802 |
T |
|
| Q |
293 |
ggaaataaaacacagaatatcaagatttttgaggcatatcat |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42111801 |
ggaaataaaacacagaatatcaagatttttgaggcatatcat |
42111760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University