View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17045_low_12 (Length: 298)
Name: NF17045_low_12
Description: NF17045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17045_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 24 - 270
Target Start/End: Complemental strand, 45342670 - 45342430
Alignment:
| Q |
24 |
tattatagtgttgtattcgtatgatgaagtgttattttgaaaattaaaaagatgctctgttctgttggattcgtgatgtagttcatttatacaatattga |
123 |
Q |
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| T |
45342670 |
tattatagtgttgtattcgtatgatgaagtgttattttgaaaattaaaaagatgctctgtt-----ggattcgtgatgtagttcatttatacaatattga |
45342576 |
T |
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| Q |
124 |
gaaataattcatcttgccttcacctaataccttaaaacttttggcatatttgttcacgaaatatggtatcacattcacaggctttgatcaagtggtgtag |
223 |
Q |
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| T |
45342575 |
gaaataattcatcttgccttcacctaataccttaaa-cttttgacatatttgttcacgaaatatggtatcacattcacaggctttgatcaagtggtgtag |
45342477 |
T |
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| Q |
224 |
agtttgattcttgctgtttagtttccattcttcaatggttgtagttc |
270 |
Q |
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| T |
45342476 |
agtttgattcttgctgtttagtttccattcttcaatggttgtagttc |
45342430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 84 - 273
Target Start/End: Complemental strand, 45347089 - 45346901
Alignment:
| Q |
84 |
tctgttggattcgtgatgtagttcatttatacaatattgagaaataattcatcttgccttcacctaataccttaaaacttttggcatatttgttcacgaa |
183 |
Q |
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| T |
45347089 |
tctgttggattcgtgatgtagttcatttatacaatattgagaaataattcatcttgccttcacctaataccttaaa-cttttgacatatttgttcacgaa |
45346991 |
T |
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| Q |
184 |
atatggtatcacattcacaggctttgatcaagtggtgtagagtttgattcttgctgtttagtttccattcttcaatggttgtagttccag |
273 |
Q |
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| T |
45346990 |
atatggtatcacattcacaggctttgatcaagtggtgtagagtttgattcttgctgtttagtttccattcttcaatggttgtagttccag |
45346901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 232
Target Start/End: Original strand, 48865371 - 48865557
Alignment:
| Q |
32 |
tgttgtattcgtatgatgaagtgttattttgaaaattaaaaagatgctctgttctgttggattcgtgatgtagttcatttatacaatattgagaaataat |
131 |
Q |
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| T |
48865371 |
tgttgcattcttatgatgaagtgttatttccaagattaaaaagatgctccattgaattgg---tgtgatagagttcatttatacaatattgaaaaacaat |
48865467 |
T |
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| Q |
132 |
tcatcttgccttcacctaataccttaaaacttttggcat-atttgttcacgaaatatggtatcacattcacaggctttgatcaagtggtgtagagtttga |
230 |
Q |
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| T |
48865468 |
tta---tgtcttcacataatagctt-aaacttttggcataatttgttcac--aaaatggtatcgcat------gctttgatccagcggtgtagagtttga |
48865555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 45349616 - 45349561
Alignment:
| Q |
53 |
tgttattttgaaaattaaaaagatgctctgttctgttggattcgtgatgtagttcatttat |
113 |
Q |
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| T |
45349616 |
tgttattttgaaaattaaaaatatgctctttt-----ggattcgtgatggagttcatttat |
45349561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 45359095 - 45359040
Alignment:
| Q |
53 |
tgttattttgaaaattaaaaagatgctctgttctgttggattcgtgatgtagttcatttat |
113 |
Q |
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| T |
45359095 |
tgttattttgaaaattaaaaatatgctctttt-----ggattcgtgatggagttcatttat |
45359040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 198 - 258
Target Start/End: Complemental strand, 11014228 - 11014168
Alignment:
| Q |
198 |
tcacaggctttgatcaagtggtgtagagtttgattcttgctgtttagtttccattcttcaa |
258 |
Q |
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| T |
11014228 |
tcacaggctttgatcaagtggtgtagagtttggttcttgttgtgtatagtccattcttcaa |
11014168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 226
Target Start/End: Complemental strand, 11004695 - 11004667
Alignment:
| Q |
198 |
tcacaggctttgatcaagtggtgtagagt |
226 |
Q |
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| T |
11004695 |
tcacaggctttgatcaagtggtgtagagt |
11004667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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