View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17045_low_16 (Length: 229)
Name: NF17045_low_16
Description: NF17045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17045_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 107; Significance: 9e-54; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 60 - 210
Target Start/End: Complemental strand, 38984671 - 38984522
Alignment:
| Q |
60 |
gagtttgaattccatttgtgtttgtactgttagcttgttgcaacctattattctttttcctgctgaaacccttttacacaggagcaaaagaagacattcc |
159 |
Q |
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| T |
38984671 |
gagtttgaattccaattgtgattgtactattagcatgttgcaacctattattcttttacctgctgaagcccttttacacaggagcaaaagaagacattcc |
38984572 |
T |
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| Q |
160 |
ctggacaactaaggttctaaaacttttggctttgaaataacctttttggaa |
210 |
Q |
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| T |
38984571 |
ct-gacaactaagggtctaaaacttttggttttgaaataccctttttggaa |
38984522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 23 - 210
Target Start/End: Complemental strand, 10583134 - 10582949
Alignment:
| Q |
23 |
tacttggcgatgtctttgggaaactccttttaaaaatgagtttgaattccatttgtgtttgtactgttagcttgttgcaacctattattctttttcctgc |
122 |
Q |
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| T |
10583134 |
tacttggtgatgtctatgggaacctcctttttagaatgagtttgaacgccatttgtgtttgtacctttagattgctgcagcctattcttttttt--ctgc |
10583037 |
T |
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| Q |
123 |
tgaaacccttttacacaggagcaaaagaagacattccctggacaactaaggttctaaaacttttggctttgaaataacctttttggaa |
210 |
Q |
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| T |
10583036 |
tgaaacccttttacacaggagcgaaggaagacattccctagacaactaaggttccaaaacttttggtttggaaatacccattttggaa |
10582949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 113 - 210
Target Start/End: Complemental strand, 357020 - 356923
Alignment:
| Q |
113 |
tttttcctgctgaaacccttttacacaggagcaaaagaagacattccctggacaactaaggttctaaaacttttggctttgaaataacctttttggaa |
210 |
Q |
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| T |
357020 |
ttttttcttctgaaacccttttacacaggagcgaaggaagacattccctagataactaatgttccaaaacttttggtttggaaataccctctttggaa |
356923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 33 - 133
Target Start/End: Original strand, 6762518 - 6762618
Alignment:
| Q |
33 |
tgtctttgggaaactccttttaaaaatgagtttgaattccatttgtgtttgtactgttagcttgttgcaacctattattctttttcctgctgaaaccctt |
132 |
Q |
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| T |
6762518 |
tgtctttggtaacctccttctgagaacgagttcaaattccatttgtgtttgtaccgttagcttgttgcaacctattcttctttttcctgctgaaaccctt |
6762617 |
T |
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| Q |
133 |
t |
133 |
Q |
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| T |
6762618 |
t |
6762618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 114 - 210
Target Start/End: Complemental strand, 16465650 - 16465554
Alignment:
| Q |
114 |
ttttcctgctgaaacccttttacacaggagcaaaagaagacattccctggacaactaaggttctaaaacttttggctttgaaataacctttttggaa |
210 |
Q |
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| T |
16465650 |
ttttcctgctgaaacccttttatacaagaacaaaagaggacatttactagccaactaaggttctaaaacttttggttttgaaataccctttttggaa |
16465554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 50249155 - 50249220
Alignment:
| Q |
145 |
aaaagaagacattccctggacaactaaggttctaaaacttttggctttgaaataacctttttggaa |
210 |
Q |
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| T |
50249155 |
aaaagaagacattccctagacaactaaggttctaaaacttttggttttgaaataccctttttggaa |
50249220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 50248348 - 50248405
Alignment:
| Q |
60 |
gagtttgaattccatttgtgtttgtactgttagcttgttgcaacctattattcttttt |
117 |
Q |
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| T |
50248348 |
gagtttaaattccatttgtatttgtaccgttagattgttgcagcctatacttcttttt |
50248405 |
T |
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