View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17045_low_2 (Length: 475)
Name: NF17045_low_2
Description: NF17045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17045_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 14 - 459
Target Start/End: Original strand, 36877584 - 36878029
Alignment:
| Q |
14 |
caaaggatacaaaattgaatcttaagaaatatgaagcgatcctcaaatcagaatacaactagccaagacataatcaagtaaaggatggagtaactcgtac |
113 |
Q |
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| T |
36877584 |
caaaggatacaaaattgaatcttaagaaatatgaagcgatcctcaaatcagaatacaactagccaagacataatcaagtaaaggatggagtaactcgtac |
36877683 |
T |
|
| Q |
114 |
aaaagcaaaacacttgaagggtccatataaatgttcaaattacctgaatgtcaagcacttgattaaatgggaaattaatcttatcatatgcacaagtcct |
213 |
Q |
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| T |
36877684 |
aaaagcaaaacacttgaagggtccatataaatgttcaaattacctgaatgtcaagcacttgattaaatgggaaattaatcttatcatatgcacaagtcct |
36877783 |
T |
|
| Q |
214 |
ccttgttatcatcatccatctacttcctaatcccatgataagcattctgaacctgcttcaacagcatcaaaagtttcttggtgagttggtggttgagttt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36877784 |
ccttgttatcatcatccatctacttcctaatcccatgataagcattctgaacctgcttcaacagcatcaaaagtttcttggtgagttggtggttgagttt |
36877883 |
T |
|
| Q |
314 |
acgatgtcttgtttaccttttaactagttactttaattaagaaccctcattttattcaacacccatgttctacagtccctttatagataaaaaggaagat |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36877884 |
acgatgtcttgtttaccttttaactagttactttaattaagaaccctcattttattcaacacccatgttctacagtccctttatagataaaaaggaagat |
36877983 |
T |
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| Q |
414 |
gatgcaaagtaaacatttatgattaaaaaagtggcacgtgcaattt |
459 |
Q |
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| T |
36877984 |
gatgcaaagtaaacatttatgattaaaaaagtggcacgtgcaattt |
36878029 |
T |
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