View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17045_low_3 (Length: 467)

Name: NF17045_low_3
Description: NF17045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17045_low_3
NF17045_low_3
[»] chr6 (1 HSPs)
chr6 (1-467)||(28745247-28745713)


Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Original strand, 28745247 - 28745713
Alignment:
Q  1 caactgagttaagctcacaatgacgatttattttacctctatctaaatattgaacatatttaattgatattcatatgttagttttatttgcttttcatta 100  Q
    ||||||| |||||||||| ||||||  |||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28745247 caactgaattaagctcacgatgacggcttattttatctctatctaaatgttgaacatatttaattgatattcatatgttatttttatttgcttttcatta 28745346  T
Q  101 cannnnnnnnnnnnatttctagaagtcccatattaaagaatttacacgcaacactattgattacaaattggaggtaggactcccgatggtgcatatttgg 200  Q
    |             |||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||| ||    
T  28745347 cgtttttttattttatttctagaagtcccatattaaagaatttacatgcaacactagtaattacaaattggaggtaggactcccgatggtgcatattggg 28745446  T
Q  201 gtacacagttttgtaaacaggtgatgacgtactcgatatgaccaacacacgttcgacgtcgtccgatcaagcctagtcgtgtggtgtattattttttagt 300  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||    
T  28745447 gtacacagttttgtaaacaggtgacgacgtactcaatatgaccaacacacgttcgaggtcgtccggtcaagcctagtcatgtggtgtattattttttagt 28745546  T
Q  301 ggcccaaagccgtaaattaattaattctttggaaattttgttttggtaacatcatcgttcagtgttttgcacgcgtcaacatgcgtttggcacactccaa 400  Q
    || |||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  28745547 ggtccaaagccgtaaattatttaattctttggaaattttgctttggtaacgtcatcgttcagggttttgcacgcgtcaacacgcgtttggcacactccaa 28745646  T
Q  401 taagtgctgaacacatgtttgtgcgcaccctcctctagtcaactcttgttcgcgttctctttgatga 467  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28745647 tgagtgctgaacacatgtttgtgcgcaccctcctctagtcaactcttgttcgcgttctcttttatga 28745713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University