View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17045_low_4 (Length: 457)

Name: NF17045_low_4
Description: NF17045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17045_low_4
NF17045_low_4
[»] chr1 (1 HSPs)
chr1 (1-457)||(48500420-48500876)


Alignment Details
Target: chr1 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Original strand, 48500420 - 48500876
Alignment:
Q  1 ttaacctccaccctacttcttctccgtattcatcccctgctattacaaccgacccgctcttactaaacggtctatttgccccgacatatcgccccctcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48500420 ttaacctccaccctacttcttctccgtattcatcccctgctattacaaccgacccgctcttactaaacggtctatttgccccgacatatcgccccctcaa 48500519  T
Q  101 cccatgaatcgggtcatcacctgtgggcttccacgagcccacttcttggcccgtcatattatcatgcaaaacaacatcaaatatagctgcgttcccctcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48500520 cccatgaatcgggtcatcacctgtgggcttccacgagcccacttcttggcccgtcatattatcatgcaaaacaacatcaaatatagctgcgttcccctcc 48500619  T
Q  201 gcgtcttgatccattctccaactctttgttctcattctccttgaagacttcgccgaagctttcacctttgaaatatctgatttctcgaaattaccattaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48500620 gcgtcttgatccattctccaactctttgttctcattctccttgaagacttcgccgaagctttcacctttgaaatatctgatttctcgaaattaccattaa 48500719  T
Q  301 caaccttctcaatttccacttctctttcattattctccgtagaccgacccaaactcaagcctgccacataactagctccaatttccgggcccacccaaac 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48500720 caaccttctcaatttccacttctctttcattattctccgtagaccgacccaaactcaagcctgccacataactagctccaatttccgggcccacccaaac 48500819  T
Q  401 ccgagcccgggaaggaaaatgtttctcgtcaacaaaatccacatcatcaccgtgttt 457  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48500820 ccgagcccgggaaggaaaatgtttctcgtcaacaaaatccacatcatcaccgtgttt 48500876  T

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