View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17045_low_6 (Length: 414)
Name: NF17045_low_6
Description: NF17045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17045_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 17 - 366
Target Start/End: Complemental strand, 10599497 - 10599148
Alignment:
| Q |
17 |
ggtcgaagctcgaagagttaagcatggtgcatacatgattgttgttgctccaacggctggaaacaacaacactctttacctaagtcttcaacgtctttga |
116 |
Q |
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| T |
10599497 |
ggtcgaagctcgaagagttaagcatggtgcatacatgattgttggtgctccaacggctggaaacaacaacactctttacctaagtcttcaacgtctttga |
10599398 |
T |
|
| Q |
117 |
atagtttgatgtgtaactgaggctactgagactggaatttcaagtgctttctatcaaattaattttagtattttagtccaagtgaaatatgtaatgtcat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10599397 |
atagtttgatgtgtaactgaggctactgagactggaatttcaagtgctttctatcaaattaattttagtattttagtccaagtgaaatatgtaatgtcat |
10599298 |
T |
|
| Q |
217 |
tgctataagttctataatagttttaatatttctatgttagttttaagttttttgaacttttaatcaaacttatttatcagacttggcaagtagtgtgaat |
316 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10599297 |
tgctataagttctataatagttttaatatttttatgttagttttaagttttttgaacttttaatcaaacttatttatcagacttggcaagtagtgtgaat |
10599198 |
T |
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| Q |
317 |
gagattttttgattatgtttcatgaaatatccaccttgaagtataattat |
366 |
Q |
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| T |
10599197 |
gagatttttttattatgtttcatgaaatatccaccttaaagtataattat |
10599148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 17 - 366
Target Start/End: Original strand, 6254766 - 6255103
Alignment:
| Q |
17 |
ggtcgaagctcgaagagttaagcatggtgcatacatgattgttgttgctccaacggctggaaacaacaacactctttacctaagtcttcaacgtctttga |
116 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| || |||||||| |
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| T |
6254766 |
ggtcgaaggtcgaagagttaagcatggtgcatacatgattgttcgtgctccaacggctggaaacaacatcactctttacctaagtcttaaatgtctttga |
6254865 |
T |
|
| Q |
117 |
atagtttgatgtgtaactgaggctactgagactggaatttcaagtgctttctatcaaattaattttagtattttagtccaagtgaaatatgtaatgtcat |
216 |
Q |
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|| ||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
6254866 |
attgtttgatgtgt-------------gagattggaatttcaagtgctttctatcaaattaatcttagtattttagtccaagtgaaatatgtaatgtcat |
6254952 |
T |
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| Q |
217 |
tgctataagttctataatagttttaatatttctatgttagtttt-aagttttttgaacttttaatcaaacttatttatcagacttggcaagtagtgtgaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| |||| |
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| T |
6254953 |
tgctataagttctataatagttttaatatttctatgttagttttaaagttttttgaacttttaatcaagcttatgtatcagacttggcaagtagtctgaa |
6255052 |
T |
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| Q |
316 |
tgagattttttgattatgtttcatgaaatatccaccttgaagtataattat |
366 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
6255053 |
tgagatattttgattatgtttcatgaaatatccaccttaaagtataattat |
6255103 |
T |
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