View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17045_low_9 (Length: 384)
Name: NF17045_low_9
Description: NF17045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17045_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 6 - 366
Target Start/End: Original strand, 44376289 - 44376649
Alignment:
| Q |
6 |
agcagcacagaatgtaatatattttcatgtaccttcaattccctcttctatattttttagtgcatgtatttgttttgcgacgtccttatcccttatcttc |
105 |
Q |
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| T |
44376289 |
agcagcacaaaatgtaatatattttcatgtaccttcaattccctcttctatattttttagtgcatgtatttgttttgcgacgtccttatcccttatcttc |
44376388 |
T |
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| Q |
106 |
tttcttggaccggagttcactttcctattcttctttcttgatccacaacacatgaagcaccattttggccaacaattacatgtcttccctggtggtttct |
205 |
Q |
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| T |
44376389 |
tttcttggaccggagttcactttcctattcttctttcttgatccacaacacatgaagcaccattttggccaacaattacatgtcttccctggtggtttct |
44376488 |
T |
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| Q |
206 |
tcttagcaggagcatcatatccatagagtgcttgcctcctgaagacacacccagttcccacatatattggtccttggatgccatctaagcctttcatatt |
305 |
Q |
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| T |
44376489 |
tcttggcaggagcatcatatccatagagtgcttgcctcctgaagacacacccagttcccacatatattggtccttggatgccatctaagcctttcatatt |
44376588 |
T |
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| Q |
306 |
gatctatatagatgtattgaaatggatattagctttttctctccaaagcacatgtagcata |
366 |
Q |
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| T |
44376589 |
gatctatatagatgtattgaaatggatattagcttttcctctccaaagcacatgtagcata |
44376649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 136 - 302
Target Start/End: Original strand, 38719717 - 38719883
Alignment:
| Q |
136 |
ttctttcttgatccacaacacatgaagcaccattttggccaacaattacatgtcttccctggtggtttcttcttagcaggagcatcatatccatagagtg |
235 |
Q |
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| T |
38719717 |
ttctttctagagccacagcaccagcagcaccattttggcaaacagttgcaggttttgcttggcggcttcttcttgacaggtgcatcatatccgtagagtg |
38719816 |
T |
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| Q |
236 |
cttgcctcctgaagacacacccagttcccacatatattggtccttggatgccatctaagcctttcat |
302 |
Q |
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| T |
38719817 |
cataccttctgaaaacacatccagttccaacataaattggaccttgtaatccatccaatcctttcat |
38719883 |
T |
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