View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17046_high_2 (Length: 388)
Name: NF17046_high_2
Description: NF17046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17046_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 11 - 367
Target Start/End: Complemental strand, 25011720 - 25011362
Alignment:
| Q |
11 |
tgagatgga-catcatcaagatgcacacaggcagaggatcgttgactggatcagtgctgctggtggtactgcaggtgcatttgatgttacaaccaaaggg |
109 |
Q |
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| T |
25011720 |
tgagatggatcataatcaagatgcacacaggcagaggatcgttgactggatcagtgctgctggtggtactgcaggtgcatttgatgttacaaccaaaggg |
25011621 |
T |
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| Q |
110 |
attcttcactctgtgagtactcaacttgacggtttcaataatttctcttcaaacttactcttcaatcctgtggaattcttcgaatagtgtatagcactta |
209 |
Q |
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| T |
25011620 |
attcttcactctgtgagtactcaacttgacggtttcaataatttctcttcaaacttactcttcaatcctgtggaattcttcgaatagtgtatagcacttt |
25011521 |
T |
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| Q |
210 |
cacgaaacgataatttgacaaagcaacgtg-tttcagatatactagtttcaccagcttagtggaatttgtttacaatctttttgtagcaagacaacaatc |
308 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25011520 |
ttcgaaacgataatttgacaaagcaacgtgttttcagatatactagtttcaccagcttagtggaatttgtttacaatctttttgtagcaagacaacaatc |
25011421 |
T |
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| Q |
309 |
tactatgtttcttgagcttttgttttttccccaataacagtgaagttacaatgatgatg |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25011420 |
tactatgtttcttgagcttttgttttttccccaataacagtgaagttacaatgacgatg |
25011362 |
T |
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