View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17046_high_8 (Length: 312)
Name: NF17046_high_8
Description: NF17046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17046_high_8 |
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| [»] chr7 (2 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 86 - 312
Target Start/End: Original strand, 12240184 - 12240410
Alignment:
| Q |
86 |
gccaaaaaccagctacaacagagaacaggaattcacagataaggcacattgcttcaaaatagagaaaataacaaaaagctgcccaatgaagtaaccaagg |
185 |
Q |
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| T |
12240184 |
gccaaaaaccagctacaacagagaacaggaattcacagataaggcacattgcttcaaaatagagaaaataacaaaaagctgcccaatgaagtaaccaatg |
12240283 |
T |
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| Q |
186 |
tacaaaagaaaacacatcttaggatctcactccaggccacacacgagctaccgaatactcggggaaggtgcaagagacatcttcgctaaaattggagcca |
285 |
Q |
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| T |
12240284 |
tacaaaagaaaacacatcttaggatctcactccaggccacacacgagctaccgaatactcggggaaggtgcaagagacatcttcgctaaaatcagagcca |
12240383 |
T |
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| Q |
286 |
aacgggcgaggattttgagatactacc |
312 |
Q |
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| T |
12240384 |
aacgggcgaggattttgagatactacc |
12240410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 12240141 - 12240187
Alignment:
| Q |
13 |
aaaataagtcagagagatacacttgaataaaaatgaaggctaagcca |
59 |
Q |
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| T |
12240141 |
aaaataagtcagagagatacccttgaataaaaatgaaggctaagcca |
12240187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 144 - 312
Target Start/End: Complemental strand, 19662715 - 19662544
Alignment:
| Q |
144 |
atagagaaaataa-caaaaagctgcccaatgaag-taaccaaggtacaaaagaaaacacatcttaggatctcactccaggccacacacgagctaccgaat |
241 |
Q |
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| T |
19662715 |
atagagaaaaaaatcataaagctaccaaatgaagctgaccaaggtacaaaagaatacatatcttaggatctcgctccaggtcacacacgagatatcgaat |
19662616 |
T |
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| Q |
242 |
actcggggaaggtgcaagagacatcttcgctaaaattggagccaaacgggcgagga-ttttgagatactacc |
312 |
Q |
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| T |
19662615 |
aatcggggatggtgcaagagacatcttcgccaaaatcagagacaaacaagcgaggatttttgagatactacc |
19662544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 19676491 - 19676430
Alignment:
| Q |
179 |
accaaggtacaaaagaaaacacatcttaggatctcactccaggccacacacgagctaccgaa |
240 |
Q |
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| T |
19676491 |
accaaggtacaaaagaatacatatcttaggatctcgttccaggtcacacacgagataccgaa |
19676430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 187 - 312
Target Start/End: Original strand, 29315056 - 29315181
Alignment:
| Q |
187 |
acaaaagaaaacacatcttaggatctcactccaggccacacacgagctaccgaatactcggggaaggtgcaagagacatcttcgctaaaattggagccaa |
286 |
Q |
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||||||||| | |||||||||||||| ||||| |||||||||| |||||||||||||||||||| |||||| ||||||||||| ||||| ||||||| |
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| T |
29315056 |
acaaaagaattcgcatcttaggatctcgctccaagccacacacgcactaccgaatactcggggaagatgcaagtgacatcttcgccaaaatcagagccaa |
29315155 |
T |
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| Q |
287 |
acgggcgaggattttgagatactacc |
312 |
Q |
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|||| ||||||| |||||||||||| |
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| T |
29315156 |
acggatgaggattatgagatactacc |
29315181 |
T |
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