View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17046_low_2 (Length: 230)
Name: NF17046_low_2
Description: NF17046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17046_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 11933727 - 11933516
Alignment:
| Q |
1 |
taaatgtcctccaataccaacggtgggacaaacgccggccggaaaaccatgaactttacttttttcattaattctatagtaaagttcaccgagttgcgcg |
100 |
Q |
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| T |
11933727 |
taaatgtcctccaacaccaacggtaggacaaacgccggccggaaaaccatgaactttacttttttcattaattctatagtaaagttcaccgagttgcgcc |
11933628 |
T |
|
| Q |
101 |
ccagtttgaacccaagctgtttcattttctacatcaacttgaattgatcttagattgaacatatctaagataaaaaatggaacttcagctacataggaaa |
200 |
Q |
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| T |
11933627 |
ccagtttgaacccaagctgtttcattttctacatcaacttgaattgatcttagattgaacatatctaagataaaaaatggaacttcagctacataggaaa |
11933528 |
T |
|
| Q |
201 |
caccctcatagt |
212 |
Q |
| |
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|||||||||||| |
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| T |
11933527 |
caccctcatagt |
11933516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 11946948 - 11946737
Alignment:
| Q |
1 |
taaatgtcctccaataccaacggtgggacaaacgccggccggaaaaccatgaactttacttttttcattaattctatagtaaagttcaccgagttgcgcg |
100 |
Q |
| |
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|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11946948 |
taaatgtcctccaacaccaacggtaggacaaacgccggccggaaaaccatgaactttacttttttcattaattctatagtaaagttcaccgagttgcgcc |
11946849 |
T |
|
| Q |
101 |
ccagtttgaacccaagctgtttcattttctacatcaacttgaattgatcttagattgaacatatctaagataaaaaatggaacttcagctacataggaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11946848 |
ccagtttgaacccaagctgtttcattttctacatcaacttgaattgatcttagattgaacatatctaagataaaaaatggaacttcagctacataggaaa |
11946749 |
T |
|
| Q |
201 |
caccctcatagt |
212 |
Q |
| |
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|||||||||||| |
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| T |
11946748 |
caccctcatagt |
11946737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 180
Target Start/End: Complemental strand, 11917553 - 11917377
Alignment:
| Q |
4 |
atgtcctccaataccaacggtgggacaaacgccggccggaaaaccatgaactttacttttttcattaattctatagtaaagttcaccgagttgcgcgcca |
103 |
Q |
| |
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||||||||||| |||||| || |||||||||||||||| |||| ||||| ||||||||| ||| |||||||||||||| |||||| ||| || ||| |
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| T |
11917553 |
atgtcctccaacaccaacagtcggacaaacgccggccgcaaaagcatgagttttacttttctcagcaattctatagtaaacttcaccaagtgttgcacca |
11917454 |
T |
|
| Q |
104 |
gtttgaacccaagctgtttcattttctacatcaacttgaattgatcttagattgaacatatctaagataaaaaatgg |
180 |
Q |
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|||||| ||||||||||||| | | || |||| || ||||||||| ||||||||||| |||||||| |||||||| |
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| T |
11917453 |
ctttgaatccaagctgtttcagtgtttatgtcaatttcaattgatctaagattgaacatgtctaagatgaaaaatgg |
11917377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 38129466 - 38129405
Alignment:
| Q |
2 |
aaatgtcctccaataccaacggtgggacaaacgccggccggaaaaccatgaactttactttt |
63 |
Q |
| |
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||||| || |||| |||||| || |||||||||||||| ||||| ||||||||||||||||| |
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| T |
38129466 |
aaatggccaccaacaccaacagttggacaaacgccggcaggaaagccatgaactttactttt |
38129405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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