View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17047_high_22 (Length: 251)
Name: NF17047_high_22
Description: NF17047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17047_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 74 - 237
Target Start/End: Complemental strand, 31908920 - 31908757
Alignment:
| Q |
74 |
attcacgatttgtaaaataggtctttgattcacaatttgaatctcattttgataaacatgctcaaaaacgttttttcttttaacattattcataaacaat |
173 |
Q |
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| T |
31908920 |
attcacgatttgtaaaataggtctttgattcacaatttgaatctcattttgataaacatgctcaaaaacgttttttcttttaacattattcataaacaat |
31908821 |
T |
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| Q |
174 |
agaaggacatagaatataaacaatattgggtacaaaaatatctaccagaagcagcacatgaccc |
237 |
Q |
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| T |
31908820 |
agagggacatagaatataaacaatattggttacaaaaatatctaccagaagcagcacatgaccc |
31908757 |
T |
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Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 31909025 - 31908951
Alignment:
| Q |
1 |
attattttaagtttcatgaatcatattcgatataccatgtcgcttgtttttacttaaaattacatttttattaat |
75 |
Q |
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| T |
31909025 |
attattttaagtttcatgaatcatattcgatataccatgtcgcttgtttttacttaaaattacatttttattaat |
31908951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 19525266 - 19525205
Alignment:
| Q |
73 |
aattcacgatttgtaaaataggtctttgattcacaatttgaatctcattttgataaacatgc |
134 |
Q |
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| T |
19525266 |
aattcatgattcgaaaaataggtctttgatgcacaatttgaatctcaatttgataaccatgc |
19525205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 122
Target Start/End: Complemental strand, 32367766 - 32367730
Alignment:
| Q |
87 |
aaaataggtcttt-gattcacaatttgaatctcattt |
122 |
Q |
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| T |
32367766 |
aaaataggtctttcgattcacaatttgaatctcattt |
32367730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 128
Target Start/End: Original strand, 6430734 - 6430782
Alignment:
| Q |
81 |
atttgtaaaataggtcttt-gattcacaatttgaatctcattttgataa |
128 |
Q |
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| T |
6430734 |
atttggaaaataggtcttttgattcacaatttgaatctcgatttgataa |
6430782 |
T |
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