View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17047_high_27 (Length: 245)

Name: NF17047_high_27
Description: NF17047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17047_high_27
NF17047_high_27
[»] chr6 (3 HSPs)
chr6 (11-230)||(34431354-34431573)
chr6 (181-230)||(34431040-34431089)
chr6 (49-113)||(34544421-34544486)
[»] chr4 (6 HSPs)
chr4 (40-114)||(2103201-2103276)
chr4 (49-114)||(39276510-39276576)
chr4 (49-114)||(42617740-42617805)
chr4 (39-114)||(41173901-41173978)
chr4 (61-113)||(52327445-52327498)
chr4 (39-94)||(34414402-34414458)
[»] chr3 (3 HSPs)
chr3 (49-114)||(9198051-9198117)
chr3 (74-111)||(32326016-32326053)
chr3 (55-114)||(9780498-9780558)
[»] chr1 (6 HSPs)
chr1 (49-114)||(1714042-1714108)
chr1 (37-114)||(3949641-3949720)
chr1 (54-114)||(21516512-21516573)
chr1 (41-114)||(28870475-28870550)
chr1 (54-114)||(3160991-3161052)
chr1 (60-116)||(31795353-31795410)
[»] chr8 (4 HSPs)
chr8 (55-114)||(43408677-43408737)
chr8 (49-114)||(35764722-35764788)
chr8 (64-99)||(38282994-38283029)
chr8 (54-114)||(2111017-2111078)
[»] chr2 (4 HSPs)
chr2 (39-116)||(30804378-30804456)
chr2 (49-99)||(31854810-31854861)
chr2 (57-110)||(42139530-42139584)
chr2 (49-116)||(9613755-9613823)
[»] scaffold0010 (1 HSPs)
scaffold0010 (54-114)||(166741-166802)
[»] chr5 (2 HSPs)
chr5 (49-108)||(1786887-1786947)
chr5 (54-114)||(28363542-28363603)
[»] scaffold0027 (1 HSPs)
scaffold0027 (44-114)||(8069-8139)


Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 34431354 - 34431573
Alignment:
Q  11 cataggccttaactaacaaaaacaacactaaacatatcttttcatgtcatttcatatttaaaactagttcaactattaattttgccaaacactacaaatt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34431354 cataggccttaactaacaaaaacaacactaaacatatcttttcatgtcatttcatatttaaaactagttcaactattaattttgccaaacactacaaatt 34431453  T
Q  111 caattataagttataagctcaaacgcaaacacgctacttgaactagcttattaaacaacactataagctaataagctccaaatttaacctcaccaaacag 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34431454 caattataagttataagctcaaacgcaaacacgctacttgaactagcttattaaacaacactataagctaataagctccaaatttaacctcaccaaacag 34431553  T
Q  211 gaccctaactaaacaaaaac 230  Q
    ||||||||||||||||||||    
T  34431554 gaccctaactaaacaaaaac 34431573  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 34431040 - 34431089
Alignment:
Q  181 ataagctccaaatttaacctcaccaaacaggaccctaactaaacaaaaac 230  Q
    |||||||| | || || ||||||||||||| |||||||||||||||||||    
T  34431040 ataagctcaagatgtatcctcaccaaacagaaccctaactaaacaaaaac 34431089  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 113
Target Start/End: Original strand, 34544421 - 34544486
Alignment:
Q  49 ttttcatgtcatttcatatttaaaa-ctagttcaactattaattttgccaaacactacaaattcaa 113  Q
    |||| ||||||||||||||||| || |||||||||| | ||||| |  ||||||||||||||||||    
T  34544421 tttttatgtcatttcatatttataagctagttcaaccactaattgtatcaaacactacaaattcaa 34544486  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 2103276 - 2103201
Alignment:
Q  40 aaacatatcttttcatgtcatttcatatttaaaacta-gttcaactattaattttgccaaacactacaaattcaat 114  Q
    ||||||||||||| ||||||||| ||||||| || |  ||||||| ||||||||| ||||||||||||||||||||    
T  2103276 aaacatatctttttatgtcattttatatttataagtttgttcaaccattaattttaccaaacactacaaattcaat 2103201  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 39276510 - 39276576
Alignment:
Q  49 ttttcatgtcatttcatatttaaaa-ctagttcaactattaattttgccaaacactacaaattcaat 114  Q
    |||| ||||||||| | ||||| || |||||||||| | ||||||| ||||||||||||||||||||    
T  39276510 tttttatgtcatttaagatttataagctagttcaaccactaattttaccaaacactacaaattcaat 39276576  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 42617740 - 42617805
Alignment:
Q  49 ttttcatgtcatttcatattta-aaactagttcaactattaattttgccaaacactacaaattcaat 114  Q
    |||||||||||||||||||||| ||| |||||||||  |||| ||| | ||||||||||||||||||    
T  42617740 ttttcatgtcatttcatatttataaattagttcaaccgttaa-tttactaaacactacaaattcaat 42617805  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 114
Target Start/End: Original strand, 41173901 - 41173978
Alignment:
Q  39 taaacatatcttt-tcatgtcatttcatatttaaaa-ctagttcaactattaattttgccaaacactacaaattcaat 114  Q
    ||||||||||||| | ||||||||||||||||| || |||||||||    ||||||| ||||||| ||||||||||||    
T  41173901 taaacatatctttgttatgtcatttcatatttacaagctagttcaatcgataattttaccaaacaatacaaattcaat 41173978  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 52327445 - 52327498
Alignment:
Q  61 ttcatatttaaaa-ctagttcaactattaattttgccaaacactacaaattcaa 113  Q
    |||||||||| || |||||||||||  ||||||| |||||||||||||||||||    
T  52327445 ttcatatttataagctagttcaactgctaattttaccaaacactacaaattcaa 52327498  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 34414402 - 34414458
Alignment:
Q  39 taaacatatcttttcatgtcatttcatattta-aaactagttcaactattaattttg 94  Q
    |||||||||||||| | ||| ||||||||||| ||| ||||||||| ||||||||||    
T  34414402 taaacatatctttttacgtcgtttcatatttataaaatagttcaaccattaattttg 34414458  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 9198117 - 9198051
Alignment:
Q  49 ttttcatgtcatttcatattta-aaactagttcaactattaattttgccaaacactacaaattcaat 114  Q
    |||| ||||||||||||||||| ||||||||||||| | ||||||| |||||||||||| |||||||    
T  9198117 tttttatgtcatttcatatttacaaactagttcaacaactaattttaccaaacactacagattcaat 9198051  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 111
Target Start/End: Complemental strand, 32326053 - 32326016
Alignment:
Q  74 ctagttcaactattaattttgccaaacactacaaattc 111  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  32326053 ctagttcaactactaattttaccaaacactacaaattc 32326016  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 114
Target Start/End: Complemental strand, 9780558 - 9780498
Alignment:
Q  55 tgtcatttcatattta-aaactagttcaactattaattttgccaaacactacaaattcaat 114  Q
    ||||||||| |||||| |||||||||||||  |||||||| ||||||| ||||||| ||||    
T  9780558 tgtcatttcgtatttataaactagttcaaccgttaattttaccaaacattacaaatccaat 9780498  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 1714108 - 1714042
Alignment:
Q  49 ttttcatgtcatttcatattta-aaactagttcaactattaattttgccaaacactacaaattcaat 114  Q
    |||| ||||||||||||||||| |||||| ||||||  |||||||| ||||||||||||||||||||    
T  1714108 tttttatgtcatttcatatttataaactacttcaacggttaattttaccaaacactacaaattcaat 1714042  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 3949720 - 3949641
Alignment:
Q  37 actaaacatatcttttc-atgtcatttcatattta-aaactagttcaactattaattttgccaaacactacaaattcaat 114  Q
    ||||||||||||||||  ||||||||||||||||| ||| ||||||||    ||||||| ||||||||||||||||||||    
T  3949720 actaaacatatcttttttatgtcatttcatatttataaattagttcaaacgctaattttaccaaacactacaaattcaat 3949641  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 21516573 - 21516512
Alignment:
Q  54 atgtcatttcatatttaaaa-ctagttcaactattaattttgccaaacactacaaattcaat 114  Q
    |||||||||||||||||||| ||| |||||| | ||||||| |||||||| |||||||||||    
T  21516573 atgtcatttcatatttaaaagctatttcaaccactaattttaccaaacacaacaaattcaat 21516512  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 28870550 - 28870475
Alignment:
Q  41 aacatatcttttc-atgtcatttcatatttaaaa-ctagttcaactattaattttgccaaacactacaaattcaat 114  Q
    ||||||||||||  |||| ||||||| |||| || ||||||||||| |||||||| |||||||||| |||||||||    
T  28870550 aacatatcttttttatgtaatttcatttttataagctagttcaactgttaattttaccaaacactaaaaattcaat 28870475  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 3160991 - 3161052
Alignment:
Q  54 atgtcatttcatatttaaaa-ctagttcaactattaattttgccaaacactacaaattcaat 114  Q
    ||||||||||||||||| |  |||||||||   |||||||| ||||||||||||||||||||    
T  3160991 atgtcatttcatatttatatgctagttcaaacgttaattttaccaaacactacaaattcaat 3161052  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 31795410 - 31795353
Alignment:
Q  60 tttcatatttaaaa-ctagttcaactattaattttgccaaacactacaaattcaatta 116  Q
    ||||||||||| || ||||||||||  ||| |||| ||||||||||||||||||||||    
T  31795410 tttcatatttataagctagttcaaccgttagttttaccaaacactacaaattcaatta 31795353  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 43408677 - 43408737
Alignment:
Q  55 tgtcatttcatatttaaaa-ctagttcaactattaattttgccaaacactacaaattcaat 114  Q
    |||||||||||||||| || ||||||||| || ||||||| ||||||||||||||||||||    
T  43408677 tgtcatttcatatttataagctagttcaattactaattttaccaaacactacaaattcaat 43408737  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 35764722 - 35764788
Alignment:
Q  49 ttttcatgtcatttcatattta-aaactagttcaactattaattttgccaaacactacaaattcaat 114  Q
    |||| ||||||||||||||||| |||||||||||||   ||||||| ||||||||| ||||||||||    
T  35764722 tttttatgtcatttcatatttataaactagttcaaccgctaattttaccaaacactgcaaattcaat 35764788  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 38282994 - 38283029
Alignment:
Q  64 atatttaaaactagttcaactattaattttgccaaa 99  Q
    ||||||||||||| ||||||||||||||||||||||    
T  38282994 atatttaaaactaattcaactattaattttgccaaa 38283029  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 2111017 - 2111078
Alignment:
Q  54 atgtcatttcatattta-aaactagttcaactattaattttgccaaacactacaaattcaat 114  Q
    ||||||||||||||||| || ||||||||||   ||||||| ||||||||| ||||||||||    
T  2111017 atgtcatttcatatttataagctagttcaaccgctaattttaccaaacactgcaaattcaat 2111078  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 116
Target Start/End: Complemental strand, 30804456 - 30804378
Alignment:
Q  39 taaacatatcttttcatgtcatttcatatttaaaa-ctagttcaactattaattttgccaaacactacaaattcaatta 116  Q
    ||||||||| | |||||||||||||||| ||| || ||||||||||   ||||||| | ||||||||||||||||||||    
T  30804456 taaacatatatgttcatgtcatttcatacttataatctagttcaaccgctaattttacgaaacactacaaattcaatta 30804378  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 31854810 - 31854861
Alignment:
Q  49 ttttcatgtcatttcatattta-aaactagttcaactattaattttgccaaa 99  Q
    |||||||||||||||||||||| ||||||||||||| ||| ||||| |||||    
T  31854810 ttttcatgtcatttcatatttataaactagttcaacaatttattttaccaaa 31854861  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 42139530 - 42139584
Alignment:
Q  57 tcatttcatatttaaaa-ctagttcaactattaattttgccaaacactacaaatt 110  Q
    |||||||||||||| || |||||||||||  ||||||| ||||||||||||||||    
T  42139530 tcatttcatatttataagctagttcaactgctaattttaccaaacactacaaatt 42139584  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 9613755 - 9613823
Alignment:
Q  49 ttttcatgtcatttcatattta-aaactagttcaactattaattttgccaaacactacaaattcaatta 116  Q
    |||||||||||||||||||||| ||  ||||||| | ||| ||||| ||||||| || |||||||||||    
T  9613755 ttttcatgtcatttcatatttataagatagttcagccattgattttaccaaacaatataaattcaatta 9613823  T

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Target: scaffold0010 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 166741 - 166802
Alignment:
Q  54 atgtcatttcatatttaaaa-ctagttcaactattaattttgccaaacactacaaattcaat 114  Q
    ||||||||||||||||| || ||||||||||   ||||||| ||||||||||||||||||||    
T  166741 atgtcatttcatatttataagctagttcaaccgctaattttaccaaacactacaaattcaat 166802  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 1786947 - 1786887
Alignment:
Q  49 ttttcatgtcatttcatatttaaa-actagttcaactattaattttgccaaacactacaaa 108  Q
    |||| |||||||||||||||||   ||||||||||| ||| ||||||||||||||||||||    
T  1786947 tttttatgtcatttcatatttatcgactagttcaaccattgattttgccaaacactacaaa 1786887  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 28363542 - 28363603
Alignment:
Q  54 atgtcatttcatattta-aaactagttcaactattaattttgccaaacactacaaattcaat 114  Q
    ||||||||||||| ||| |||||||||||||   |||| || ||||||||||||||||||||    
T  28363542 atgtcatttcatacttataaactagttcaacagctaatattaccaaacactacaaattcaat 28363603  T

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Target: scaffold0027 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 114
Target Start/End: Original strand, 8069 - 8139
Alignment:
Q  44 atatcttttcatgtcatttcatatttaaaactagttcaactattaattttgccaaacactacaaattcaat 114  Q
    |||| |||| |||||||||||||||| ||  |||| |||| | |||||||  |||||||||||||||||||    
T  8069 atatttttttatgtcatttcatattttaaggtagtgcaacaactaattttatcaaacactacaaattcaat 8139  T

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