View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17047_high_28 (Length: 243)
Name: NF17047_high_28
Description: NF17047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17047_high_28 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 7181402 - 7181180
Alignment:
| Q |
1 |
aaaaataacctcataaactaggagtttagacaaagaagagggtttaaaaaccattcaaaatatatacaaggtcnnnnnnnnn-ctctagcaaggaatcac |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7181402 |
aaaaataacctcataaactaggagtttagacaaagaagagggttgaaaaaccattcaaaatatatacaaggtcttttttttttctctagcaaggaatcac |
7181303 |
T |
|
| Q |
100 |
ctccaagaagtggttttaatagaatctacaatccccttctattctatatatggggaatttgaagagaaaataattttgtttcaccatgttaccaattctt |
199 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7181302 |
ctccaagaagtggttttaatcgaatctacaacccccttctat-----atatggggaatttgaagagaaaataattttgtttcaccatgttaccaaatctt |
7181208 |
T |
|
| Q |
200 |
tcaaatagttgtatatcaaattagagtt |
227 |
Q |
| |
|
|||||| ||||||||||||||||||||| |
|
|
| T |
7181207 |
tcaaattgttgtatatcaaattagagtt |
7181180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University