View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17047_high_3 (Length: 530)
Name: NF17047_high_3
Description: NF17047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17047_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 17 - 513
Target Start/End: Original strand, 34014419 - 34014915
Alignment:
| Q |
17 |
cacagaagcaaggtctacatgtttagctagtgctgataactatgaatttggagtttatgaatggagtgttcaacttgttacaaataatagtcgaattgaa |
116 |
Q |
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| T |
34014419 |
cacagaagcaaggtctacatgtttagctagtgctgataactatgaatttggagtttatgaatggagtgttcaacttgttacaaataatagtcgaattgaa |
34014518 |
T |
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| Q |
117 |
aagatactccttcctatcttttggggcctaatgactctcaggtattttctcatcacattgtacacttcatgattttaaattgtagttgcgatgatgacta |
216 |
Q |
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| T |
34014519 |
aagatactccttcctatcttttggggcctaatgactctcaggtattttctcatcacattgtacatttcatgattttaaattgtagttgcgatgatgacta |
34014618 |
T |
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| Q |
217 |
atgactatggttacgctgcaaacctttatattacggtaaaatgtggacaattcatgatgacatattgaattgaatagtaacaaaataccatgtacgtgat |
316 |
Q |
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| T |
34014619 |
atgactatggttacgctgcaaacctttatattatggtaaaatgtggacaattcatgatgacatattgaattgaatagtaacaaaataccatgtacgtgat |
34014718 |
T |
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| Q |
317 |
tcatgcattattggtaccgttgttgtagttaaggatgcttcatatgcactttatatatctcattgtcacaaaagttttttgttgatgtggtcagcacttt |
416 |
Q |
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| T |
34014719 |
tcatgcattattggtaccgttgttgtagttaaggatgcttcatatgcacattatatatctcattgtcacaaaagttttttgttgatgtggtcagcacttt |
34014818 |
T |
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| Q |
417 |
tgggaacctccagagtacaacggaaaggatggaagtcgttttcaacactattatattaaccagtggcctccttctagtcactatgctaattggaaac |
513 |
Q |
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| T |
34014819 |
tgggaacctccagagtacaacggaaaggatggaagtcgttttcaacactattatattaaccagtggcctccttctagtcactatgctaattggaaac |
34014915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 224 - 258
Target Start/End: Complemental strand, 10164137 - 10164103
Alignment:
| Q |
224 |
tggttacgctgcaaacctttatattacggtaaaat |
258 |
Q |
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| T |
10164137 |
tggttacgctgcaaacctttatattgcggtaaaat |
10164103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 501
Target Start/End: Original strand, 22847724 - 22847816
Alignment:
| Q |
409 |
agcacttttgggaacctccagagtacaacggaaaggatggaagtcgttttcaacactattatattaaccagtggcctccttctagtcactatg |
501 |
Q |
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| T |
22847724 |
agcacttttggaaacctcgagagcacaacggattggctagaagtagttttcaacatcataatcttgactagtggacttcttctagtcactatg |
22847816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 26331745 - 26331705
Alignment:
| Q |
222 |
tatggttacgctgcaaacctttatattacggtaaaatgtgg |
262 |
Q |
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| T |
26331745 |
tatggttacactgcgaacctttatattgcggtaaaatgtgg |
26331705 |
T |
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