View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17047_high_5 (Length: 415)
Name: NF17047_high_5
Description: NF17047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17047_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 48081218 - 48080809
Alignment:
| Q |
1 |
gttgcataaaaacgatatttgtgttcgctctatatctttgcagatatccgatagatgaaatatatttgccgagttatgaggtatctacgtgtatcatgta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
48081218 |
gttgcataaaaacgatatttgtgttcgctctatatctttgcagatatccgatagatggaatatatttgacgagttatgaggtatctacgtgtatcatgta |
48081119 |
T |
|
| Q |
101 |
tttttcnnnnnnnnnnnnnnttgtaattatatagattttctttcctgtcattttacagcagaaaagagtattgatgcatataattatttcttcttcgtcc |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
48081118 |
tttttcaaaaaaaataaaaattgtaattatatagattttctttcctgtcattttacaacagaaaagagtattgatgcatataattatttcttcttcgtcc |
48081019 |
T |
|
| Q |
201 |
ataattataagcactagatcgttgcatatttggtgctcgc------ttatccttttgtacactttccaattttattgatttctttagctccaattcttca |
294 |
Q |
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||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48081018 |
ataattataagcact----cgttgcatatttggtgctcgcgctcgcttatccttttgtacactttccaattttattgatttctttagctccaattcttca |
48080923 |
T |
|
| Q |
295 |
agtgtacccacccatgagtgctaagtctcttaaacccataatcacaaggaaatgttaaaagtacatgtaaaataaaaacctaaattctaaacatgctacc |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48080922 |
agtgtacccacccatgagtgctaagtctcttaaacccataatcacaaggaaatattaaaagtacatgtaaaataaaaacctaaattctaaacatgctacc |
48080823 |
T |
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| Q |
395 |
ccgtgttcttctct |
408 |
Q |
| |
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|| ||||||||||| |
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| T |
48080822 |
ccatgttcttctct |
48080809 |
T |
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