View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17047_low_10 (Length: 358)
Name: NF17047_low_10
Description: NF17047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17047_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 16298237 - 16297903
Alignment:
| Q |
1 |
tatgcatttatttgtgcacatgtatgcattcttaaacaagttacagacaaccaccgggatttagtgagtggtcggtgcacatt---gtatgcgagtgttg |
97 |
Q |
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| T |
16298237 |
tatgcatttatttgtgcacatgtatgcattcttaaacaagttacagacaaccaccagga--------gtggtcggtgcacattaatgtatgcgagtgttg |
16298146 |
T |
|
| Q |
98 |
taaattctgagataccgagttcaatttctactcgtaaaaatacaaattacagacagaatctaaatcttacttgaaataatttacgcttcggactttgaaa |
197 |
Q |
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|||| |||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16298145 |
taaactctgagataccgagttcaatttctacccgtaaaaacacaaattacaaacagaatctaaatcttacttgaaataatttacgcttcggactttgaaa |
16298046 |
T |
|
| Q |
198 |
gttcctggctcaatgtgtgaccaacaatcaagcattttcttgtcaattggacagaagggtacttgagaacctgcaattggtctttgtagtgtctttgaag |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16298045 |
gttcctggctcaatgtgtgaccaacaatcaagcattttcttgtcaataggacaaaagggtacttgagaacctgcaattggtctttgtagtgtctttgaag |
16297946 |
T |
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| Q |
298 |
aaactgaaaaccataaaatgaagcaaaatgaagagttagaata |
340 |
Q |
| |
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|||||||||||||||||||||| ||||| ||||| |||||||| |
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| T |
16297945 |
aaactgaaaaccataaaatgaaacaaaaagaagaattagaata |
16297903 |
T |
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