View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17047_low_12 (Length: 327)

Name: NF17047_low_12
Description: NF17047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17047_low_12
NF17047_low_12
[»] chr1 (1 HSPs)
chr1 (8-301)||(7181928-7182219)


Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 8 - 301
Target Start/End: Complemental strand, 7182219 - 7181928
Alignment:
Q  8 agattattctgcagaaatttgtcaaatgtaaatcaagtccccccttgagattttgagtatttcaggaaaactaaaatattgttgtcccctcataattata 107  Q
    |||||||||| ||||||| |||||||||||| ||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7182219 agattattctccagaaatgtgtcaaatgtaa-tcaagtcccac-ttgagattttgagtatttcaagaaaactaaaatattgttgtcccctcataattata 7182122  T
Q  108 tcattagaattattttctagaaactgtggcgaagttttaacnnnnnnntttgggtgtcaaagtgagcataaagaatttacagttgcaaatttttaaaata 207  Q
    |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7182121 tcattagaattattttctagaaactgtggcgaagttttaacaaaaaaatttgggtgtcaaagtgagcataaagaatttacagttgcaaatttttaaaata 7182022  T
Q  208 aaataaagtgcaaattcttgaaattgtaacaacagtagtagggcaacatgaacaaccaatcaaaataacgaaacacgtatcactacacaacaac 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7182021 aaataaagtgcaaattcttgaaattgtaacaacagtagtagggcaacatgaacaaccaatcaaaataacgaaacacatatcactacacaacaac 7181928  T

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