View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17047_low_13 (Length: 320)

Name: NF17047_low_13
Description: NF17047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17047_low_13
NF17047_low_13
[»] chr7 (1 HSPs)
chr7 (15-304)||(36774155-36774447)


Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 15 - 304
Target Start/End: Complemental strand, 36774447 - 36774155
Alignment:
Q  15 agagagtgtaatttattctaaacaaaactgtttttgagtttaataaa---ttagtggtgaacaaaagtgtgatagaacaaaatgcttccacttcaaccga 111  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||   |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  36774447 agagagtgtaatttactctagacaaaactgtttttgagtttaataaaaaattaggggtgaacaaaagtgtgatagaacaaaatgcttccacttcaaccga 36774348  T
Q  112 ccaccatagttctttgaaatttccgtagttagcaacttcctctttgcttcccaactctagtcacacgcgaagacaaggtatcaggtttgaaatttctatg 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  36774347 ccaccatagttctttgaaatttccgtagttagcaacttcctctttgcttcccaactctagtcacacgcgacgacaaggtatcaggtttgaaatttctatg 36774248  T
Q  212 caacttattcacagcacttattagttaaactggtttatgtgaagtagtatatgatacattattttcatcttaattagttcctctagtttgatc 304  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36774247 caacttattcacggcacttattagttaaactggtttatgtgaagtagtatatgatacattattttcatcttaattagttcctctagtttgatc 36774155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University