View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17047_low_15 (Length: 308)
Name: NF17047_low_15
Description: NF17047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17047_low_15 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 7 - 308
Target Start/End: Complemental strand, 50274116 - 50273815
Alignment:
| Q |
7 |
gtgagatgaaaataaatggattatgaggtttatgtataagaaattgaggaacataagagatacatgatagtggtcaatctatgtatgagtatatcacatc |
106 |
Q |
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| T |
50274116 |
gtgacatgaaaataaatggattatgaggtttatgtataataaattgaggaacataagagatacatgatagtggtcaatctatgtatgagtatatcacatc |
50274017 |
T |
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| Q |
107 |
caatagtgtccaagttggaagaatatgttgcaatttcgtacgtttgcaagtgtctgctctttgagtactttattaaattttagtatgatatgttgtcata |
206 |
Q |
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| T |
50274016 |
caatagtgtccaagttggaagaatatgttgcaatttcgtacgtttgcaagtgtctgctctttgagtactttattaaattttagtatgatatgttgtcata |
50273917 |
T |
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| Q |
207 |
ttgaatctttaaggccaaatctaatggatcaaaatttacaagagttttgatggttactttttagtgacataaatggtcattattcttcaccatacgtcta |
306 |
Q |
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| T |
50273916 |
ttgaatctttaaggccaaatctaatggatcaaaatttacaagagttttgatggttactttttagtgacataaatggtcattattcttcaccatacgtcta |
50273817 |
T |
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| Q |
307 |
ca |
308 |
Q |
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| T |
50273816 |
ca |
50273815 |
T |
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Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 14463075 - 14463121
Alignment:
| Q |
145 |
tacgtttgcaagtgtctgctctttgagtactttattaaattttagta |
191 |
Q |
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| T |
14463075 |
tacgtttgcaagtgtctgctctttgagtactttattaaattttagta |
14463121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 14463438 - 14463487
Alignment:
| Q |
183 |
attttagtatgatatgttgtcatattgaatctttaaggccaaatctaatg |
232 |
Q |
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| T |
14463438 |
attttagtatgatatgttgtcatattgaatctttaaggtcaaatctaatg |
14463487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 14463036 - 14463074
Alignment:
| Q |
7 |
gtgagatgaaaataaatggattatgaggtttatgtataa |
45 |
Q |
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| T |
14463036 |
gtgacatgaaaataaatggattatgaggtttatgtataa |
14463074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 14463486 - 14463520
Alignment:
| Q |
208 |
tgaatctttaaggccaaatctaatggatcaaaatt |
242 |
Q |
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| T |
14463486 |
tgaatctttaaggccaaatctaatggatcaaaatt |
14463520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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