View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17047_low_2 (Length: 571)
Name: NF17047_low_2
Description: NF17047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17047_low_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 1 - 571
Target Start/End: Complemental strand, 27967 - 27397
Alignment:
| Q |
1 |
ctagtgattagtgaacatgagttgacattctgtgttttctgaggatcctgttgccttgagaaggcgttagtcagataccatgtttttacttactagggct |
100 |
Q |
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| T |
27967 |
ctagtgattagtgaacatgagttgacattctgtgttttctgaggatcctgttgccttgagaaggcgttagtcagataccatgtttttacttactagggct |
27868 |
T |
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| Q |
101 |
gaatattgtgccagaatcatagtgaagcaatttggttagataatagtatacacactcacggatttttaacatctatctaaacatcaattctttaaatccc |
200 |
Q |
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| T |
27867 |
gaatattgtgccagaatcatagtgaagcaatttggttagataatagtatacacactcacggatttttaacatctatctaaacatcaattctttaaatccc |
27768 |
T |
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| Q |
201 |
tggtgatcagttttgagttttgactctgaatttctttcacggcaaatagtgtctccaattccctctgcctaggtagaggttatttacatgcaaaagccat |
300 |
Q |
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| T |
27767 |
tggtgatcagttttgagttttgactctgaatttctttcacggcaaatagtgtctccaattccctctgcctaggtagaggttatttacatgcaaaagccat |
27668 |
T |
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| Q |
301 |
agctaaccttgtactgcttcttaacgaaataggctatagtattgcatgtgctgctagggtcactggtcagcattagcaatgctccattggaattggcaag |
400 |
Q |
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| T |
27667 |
agctaatcttgtactgcttcttaacgaaataggctatagtattgcatgtgctgctagggtcactggtcagcattagcaatgctccattggaattggcaag |
27568 |
T |
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| Q |
401 |
tgctagcacaagaatgttggacacagccnnnnnnnagtcatcaaaggtaaaatcagcaatgactttggacacatgtttattttaagttgtaacaagtcaa |
500 |
Q |
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| T |
27567 |
tgctagcacaagaatgttggacacggcctttttttagtcatcaaaggtaaaatcagcaatgactttggacacatgtttattttaagttgtaacaagtcaa |
27468 |
T |
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| Q |
501 |
acttagaaatgttctaagctgtttgacacaagtagccgtaggccaagccaagaatattgctattatcttct |
571 |
Q |
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| T |
27467 |
acttagaaatgttctaagctgtttgacacaagtaggcgtaggccaagccaagaatattgctattatcttct |
27397 |
T |
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