View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17047_low_20 (Length: 254)
Name: NF17047_low_20
Description: NF17047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17047_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 75 - 243
Target Start/End: Original strand, 11007084 - 11007254
Alignment:
| Q |
75 |
gagatccattgtatctaacagcgaacaatcaacaacta---atttcccttttattcatcatctttctttctctatatcatcttcgacatatcctttatac |
171 |
Q |
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| T |
11007084 |
gagattcattgtatctaacagcgaaccatcaacaactatttatttcccttttattcatcatctttctttctctatatcatcttcgacatatcctttatac |
11007183 |
T |
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| Q |
172 |
accttcatcatattnnnnnnnntgtatattcgagaaagtcaattcatctcccacctccactccttcatctct |
243 |
Q |
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| T |
11007184 |
accttcatcatatt-aaaaaaatgtatattcgagaaagtcaattcatctcccacctccactccttcatctct |
11007254 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 42877866 - 42877899
Alignment:
| Q |
83 |
ttgtatctaacagcgaacaatcaacaactaattt |
116 |
Q |
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| T |
42877866 |
ttgtatctaacagcgaaccatcaacaactaattt |
42877899 |
T |
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