View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17047_low_24 (Length: 249)
Name: NF17047_low_24
Description: NF17047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17047_low_24 |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 144 - 205
Target Start/End: Original strand, 4638133 - 4638194
Alignment:
| Q |
144 |
gcaccaactcccagaatcacaaaaccttatgcttgatgaccaagaaacctgcagaagaagat |
205 |
Q |
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| T |
4638133 |
gcaccaactcccagaatcacaaaaccttatgcttgatgaccaagaaacctgcagaagaagat |
4638194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 4638001 - 4638053
Alignment:
| Q |
12 |
cacagacccaaaaacatataaatcaatttttagaaacattatccaacattcat |
64 |
Q |
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| T |
4638001 |
cacagacccaaaaacatataaatcaattttaagaaacattatccaacattcat |
4638053 |
T |
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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 27261387 - 27261434
Alignment:
| Q |
17 |
acccaaaaacatataaatcaatttttagaaacattatccaacattcat |
64 |
Q |
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| T |
27261387 |
acccaaaaacatataaatcaattttaaaaaacattaaccaacactcat |
27261434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 205
Target Start/End: Complemental strand, 12808403 - 12808346
Alignment:
| Q |
148 |
caactcccagaatcacaaaaccttatgcttgatgaccaagaaacctgcagaagaagat |
205 |
Q |
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| T |
12808403 |
caactccaagaatcacaaacccttatgcttgacaaccaagaaacctgcagaagaagat |
12808346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 205
Target Start/End: Original strand, 2634181 - 2634238
Alignment:
| Q |
148 |
caactcccagaatcacaaaaccttatgcttgatgaccaagaaacctgcagaagaagat |
205 |
Q |
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| T |
2634181 |
caactccaagaatcacaaacccttatgcttgacaaccaagaaacctgcagaagaagat |
2634238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 203
Target Start/End: Complemental strand, 5828 - 5773
Alignment:
| Q |
148 |
caactcccagaatcacaaaaccttatgcttgatgaccaagaaacctgcagaagaag |
203 |
Q |
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| T |
5828 |
caactccaagaatcacaaacccttatgcttgacaaccaagaaacctgcagaagaag |
5773 |
T |
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