View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17047_low_25 (Length: 248)

Name: NF17047_low_25
Description: NF17047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17047_low_25
NF17047_low_25
[»] chr8 (2 HSPs)
chr8 (13-248)||(33114749-33114984)
chr8 (166-212)||(32736493-32736539)
[»] chr7 (2 HSPs)
chr7 (87-199)||(17111889-17112001)
chr7 (98-190)||(45557418-45557510)
[»] chr2 (2 HSPs)
chr2 (157-212)||(45066473-45066528)
chr2 (87-153)||(38002781-38002847)
[»] chr6 (1 HSPs)
chr6 (97-146)||(3798997-3799046)
[»] chr4 (2 HSPs)
chr4 (168-208)||(5923908-5923948)
chr4 (160-212)||(44278969-44279021)


Alignment Details
Target: chr8 (Bit Score: 159; Significance: 9e-85; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 33114984 - 33114749
Alignment:
Q  13 ctcattatacccaatttttctagtgcttttcaaaatattctaccaagtgtatgcttgattctatgacnnnnnnnttgatttttggtgaattgattctgat 112  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||         ||||||| |||||||||||||||||    
T  33114984 ctcattatacccaatttttcttgtgcttttcaaaatattctactaagtgtacgcttgattctatgataaaaaaaatgattttcggtgaattgattctgat 33114885  T
Q  113 taaatgtgaattgtaggtaaaacgatttatgtttagatacactgatataaatatgaattgaactataaatttgtgtgttcgaatcaattttaaaataaaa 212  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||| |||||||| | ||||||||||||||||||||| |||||||||| ||||||||||    
T  33114884 taaatatgaattgtaggtaaaacgatttatgtttagatacattgacataaatataagttgaactataaatttgtgtgtacgaatcaattctaaaataaaa 33114785  T
Q  213 cattatagtaaattctaatttcaagtaatatcaatt 248  Q
    |||||||||||||| |||||||||||||||||||||    
T  33114784 cattatagtaaattttaatttcaagtaatatcaatt 33114749  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 32736539 - 32736493
Alignment:
Q  166 tgaattgaactataaatttgtgtgttcgaatcaattttaaaataaaa 212  Q
    |||||||||||||||||||||||||   ||| |||||||||||||||    
T  32736539 tgaattgaactataaatttgtgtgtaaaaattaattttaaaataaaa 32736493  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 199
Target Start/End: Complemental strand, 17112001 - 17111889
Alignment:
Q  87 ttgatttttggtgaattgattctgattaaatgtgaattgtaggtaaaacgatttatgtttagatacactgatataaatatgaattgaactataaatttgt 186  Q
    ||||||||  ||||||||||| ||| ||||  |||||||||||||||  ||||| ||||| ||| || | || |||| |||| | ||| |||||||||||    
T  17112001 ttgattttgagtgaattgattttgactaaaattgaattgtaggtaaagtgatttgtgtttggatgcattcatgtaaaaatgagtagaattataaatttgt 17111902  T
Q  187 gtgttcgaatcaa 199  Q
    ||||  |||||||    
T  17111901 gtgtaagaatcaa 17111889  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 190
Target Start/End: Complemental strand, 45557510 - 45557418
Alignment:
Q  98 tgaattgattctgattaaatgtgaattgtaggtaaaacgatttatgtttagatacactgatataaatatgaattgaactataaatttgtgtgt 190  Q
    |||||||||||||| |||| |||| ||| |||||||  ||||| ||||| |||||| | || ||||  ||| |||| ||| ||||||||||||    
T  45557510 tgaattgattctgactaaaagtgagttgaaggtaaagtgatttgtgtttggatacattcatgtaaaagtgagttgagctacaaatttgtgtgt 45557418  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 45066528 - 45066473
Alignment:
Q  157 atataaatatgaattgaactataaatttgtgtgttcgaatcaattttaaaataaaa 212  Q
    ||||||| |||||||||| |||||||||||||||   ||| |||||||||||||||    
T  45066528 atataaaaatgaattgaattataaatttgtgtgtgaaaataaattttaaaataaaa 45066473  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 153
Target Start/End: Complemental strand, 38002847 - 38002781
Alignment:
Q  87 ttgatttttggtgaattgattctgattaaatgtgaattgtaggtaaaacgatttatgtttagataca 153  Q
    ||||||||  ||||||||||| |||||||| || |||||||| ||||   |||||||||||||||||    
T  38002847 ttgattttgagtgaattgattttgattaaaagttaattgtagataaagtcatttatgtttagataca 38002781  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 3799046 - 3798997
Alignment:
Q  97 gtgaattgattctgattaaatgtgaattgtaggtaaaacgatttatgttt 146  Q
    |||||||||||||||||||| |||| ||| || ||||| |||||||||||    
T  3799046 gtgaattgattctgattaaaagtgagttgaagataaaatgatttatgttt 3798997  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 208
Target Start/End: Original strand, 5923908 - 5923948
Alignment:
Q  168 aattgaactataaatttgtgtgttcgaatcaattttaaaat 208  Q
    ||||||||||||||||||| ||||  |||||||||||||||    
T  5923908 aattgaactataaatttgtatgttataatcaattttaaaat 5923948  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 44278969 - 44279021
Alignment:
Q  160 taaatatgaattgaactataaatttgtgtgttcgaatcaattttaaaataaaa 212  Q
    |||| |||| ||||| || |||||| |||||| ||||||||||||||||||||    
T  44278969 taaaaatgatttgaattaaaaatttatgtgttagaatcaattttaaaataaaa 44279021  T

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