View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17047_low_26 (Length: 247)

Name: NF17047_low_26
Description: NF17047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17047_low_26
NF17047_low_26
[»] chr8 (10 HSPs)
chr8 (17-188)||(31909063-31909233)
chr8 (17-151)||(35416089-35416225)
chr8 (21-145)||(3788506-3788630)
chr8 (17-145)||(3479079-3479206)
chr8 (21-139)||(3785802-3785920)
chr8 (19-145)||(12062802-12062931)
chr8 (17-145)||(369297-369425)
chr8 (21-145)||(19472489-19472611)
chr8 (21-145)||(19543414-19543536)
chr8 (21-145)||(19589160-19589282)
[»] chr7 (7 HSPs)
chr7 (21-145)||(2577018-2577142)
chr7 (17-145)||(1773530-1773661)
chr7 (17-144)||(18446618-18446735)
chr7 (70-145)||(26389241-26389317)
chr7 (22-107)||(1715747-1715832)
chr7 (70-128)||(9457682-9457739)
chr7 (17-61)||(26389208-26389252)
[»] chr2 (2 HSPs)
chr2 (17-152)||(26608007-26608143)
chr2 (17-154)||(20509104-20509239)
[»] chr6 (5 HSPs)
chr6 (17-144)||(9664639-9664768)
chr6 (30-151)||(21146819-21146941)
chr6 (17-151)||(787301-787437)
chr6 (28-145)||(33638784-33638902)
chr6 (42-152)||(3074971-3075083)
[»] chr3 (9 HSPs)
chr3 (12-151)||(27462136-27462277)
chr3 (19-151)||(20868712-20868847)
chr3 (17-153)||(24595239-24595377)
chr3 (19-151)||(20871350-20871490)
chr3 (17-152)||(447069-447206)
chr3 (21-145)||(51308829-51308955)
chr3 (70-145)||(51306418-51306493)
chr3 (17-63)||(35610831-35610878)
chr3 (97-151)||(27462290-27462344)
[»] chr1 (5 HSPs)
chr1 (17-145)||(16385597-16385725)
chr1 (17-125)||(20225517-20225627)
chr1 (42-151)||(20226820-20226932)
chr1 (19-145)||(27356025-27356151)
chr1 (34-145)||(12685139-12685250)
[»] chr4 (3 HSPs)
chr4 (17-151)||(55849419-55849556)
chr4 (19-137)||(46432478-46432596)
chr4 (42-103)||(55852053-55852115)
[»] chr5 (4 HSPs)
chr5 (17-145)||(4215266-4215395)
chr5 (28-145)||(37498209-37498327)
chr5 (17-122)||(27172855-27172961)
chr5 (63-145)||(18587369-18587452)
[»] scaffold0016 (1 HSPs)
scaffold0016 (24-145)||(48431-48554)
[»] scaffold0889 (1 HSPs)
scaffold0889 (89-136)||(3292-3339)
[»] scaffold0870 (1 HSPs)
scaffold0870 (89-136)||(3496-3543)


Alignment Details
Target: chr8 (Bit Score: 164; Significance: 9e-88; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 31909233 - 31909063
Alignment:
Q  17 agtttagtcactatataagtcacaagttgactcatttgtacctctctctttcattttgtatcttttcaactatcatcaatacaatagctttgtaagcttt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31909233 agtttagtcactatataagtcacaagttgactcatttgtacctctctctttcattttgtatcttttcaactatcatcaatacaatagctttgtaagcttt 31909134  T
Q  117 tctctctattttcatggatgccatgtttcctaacaaatcactgtctaaacacagtgtaggtgtagctgacca 188  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31909133 tctctctattttcatggatg-catgtttcctaacaaatcactgtctaaacacagtgtaggtgtagctgacca 31909063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 35416225 - 35416089
Alignment:
Q  17 agtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaatagctttgtaagct 114  Q
    |||||||| ||||||||||||||| | ||||||||||||||| | |||  |||||| ||||||| ||||||||| ||| |||||||||| |||  |||||    
T  35416225 agtttagtgactatataagtcacatggttgactcatttgtacttatcttcttcattattgtatcatttcaactaccattaatacaatagtttttcaagct 35416126  T
Q  115 tttctctctattttcatggatgccatgtttcctaaca 151  Q
    |||||||||||||| |||||||||||||||| |||||    
T  35416125 tttctctctatttttatggatgccatgtttcttaaca 35416089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 3788630 - 3788506
Alignment:
Q  21 tagtcactatataagtcacaagttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaatagctttgtaagctt-ttc 118  Q
    |||||||| |||||||||||||||||| ||||||||  || || ||||||| ||||||| |||||||||| ||||||||||||  ||| ||| ||| |||    
T  3788630 tagtcactgtataagtcacaagttgacccatttgta--tcactttttcattcttgtatcatttcaactattatcaatacaataattttctaaacttcttc 3788533  T
Q  119 tctctattttcatggatgccatgtttc 145  Q
    |||||||||||||||||||||||||||    
T  3788532 tctctattttcatggatgccatgtttc 3788506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 3479079 - 3479206
Alignment:
Q  17 agtttagtcactatataagtcacaagttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaatagctttgtaagctt 115  Q
    ||||||||| ||| |||||||||||||||||||||||||||| ||||  |||| | ||| |||||||||||||| ||||||||| ||  ||| |||| ||    
T  3479079 agtttagtccctacataagtcacaagttgactcatttgtaccgctct--ttcactgttgcatcttttcaactattatcaatacagtaattttttaagttt 3479176  T
Q  116 ttctctctattttcatggatgccatgtttc 145  Q
    || |||||||||||||||||| ||||||||    
T  3479177 ttttctctattttcatggatgtcatgtttc 3479206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 139
Target Start/End: Complemental strand, 3785920 - 3785802
Alignment:
Q  21 tagtcactatataagtcacaagttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaatagctttgtaagctt-ttc 118  Q
    ||||||||||||||||||||||||||||||||||||  || || ||| ||| ||||||| |||||||||| ||||||||||||  ||  ||||||| |||    
T  3785920 tagtcactatataagtcacaagttgactcatttgta--tcacttttttattcttgtatcatttcaactattatcaatacaataatttcctaagcttcttc 3785823  T
Q  119 tctctattttcatggatgcca 139  Q
    |||||||||||||||||||||    
T  3785822 tctctattttcatggatgcca 3785802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 12062802 - 12062931
Alignment:
Q  19 tttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatc-ttttcaactatcatcaatacaatagctttgtaagctt 115  Q
    |||||| ||||||||||||||| | ||||||||||||||||    ||||||||| ||||||  |||||||| |||||||| | ||||| ||| |||||||    
T  12062802 tttagttactatataagtcacatggttgactcatttgtacccacatctttcattcttgtattattttcaaccatcatcaagagaatagttttctaagctt 12062901  T
Q  116 ttctctctattttcatggatgccatgtttc 145  Q
    ||||||||||||||||||||||||||||||    
T  12062902 ttctctctattttcatggatgccatgtttc 12062931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 369297 - 369425
Alignment:
Q  17 agtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatttt-gtatcttttcaactatcatcaatacaatagctttgtaagct 114  Q
    |||||||| |||| |||||||| | | ||| || |||||||||  ||||||| ||||| ||||||||||||||||||||||||||||||  ||||||| |    
T  369297 agtttagttactaaataagtcatatggttggctaatttgtaccgatctcttttatttttgtatcttttcaactatcatcaatacaatag--ttgtaagtt 369394  T
Q  115 tttctctctattttcatggatgccatgtttc 145  Q
    ||||||| |||||||||||||| ||||||||    
T  369395 tttctctttattttcatggatgtcatgtttc 369425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 19472611 - 19472489
Alignment:
Q  21 tagtcactatataagtcacaagttgactcatttgtacctctctctttca-ttttgtatcttttcaactatcatcaatacaatagctttgtaagctttt-c 118  Q
    |||||||||||| |||||||||||||||| |||||| ||||    |||| ||||||||| ||||||||||  |||||| ||||  ||  ||||||||| |    
T  19472611 tagtcactatatcagtcacaagttgactcttttgtaactct----ttcacttttgtatcatttcaactattttcaatataataatttcttaagctttttc 19472516  T
Q  119 tctctattttcatggatgccatgtttc 145  Q
    |||||||||||||||||||||||||||    
T  19472515 tctctattttcatggatgccatgtttc 19472489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 19543536 - 19543414
Alignment:
Q  21 tagtcactatataagtcacaagttgactcatttgtacctctctctttca-ttttgtatcttttcaactatcatcaatacaatagctttgtaagctttt-c 118  Q
    |||||||||||| |||||||||||||||| |||||| ||||    |||| ||||||||| ||||||||||  |||||| ||||  ||  ||||||||| |    
T  19543536 tagtcactatatcagtcacaagttgactcttttgtaactct----ttcacttttgtatcatttcaactattttcaatataataatttcttaagctttttc 19543441  T
Q  119 tctctattttcatggatgccatgtttc 145  Q
    |||||||||||||||||||||||||||    
T  19543440 tctctattttcatggatgccatgtttc 19543414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 19589160 - 19589282
Alignment:
Q  21 tagtcactatataagtcacaagttgactcatttgtacctctctctttca-ttttgtatcttttcaactatcatcaatacaatagctttgtaagctttt-c 118  Q
    |||||||||||| |||||||||||||||| |||||| ||||    |||| ||||||||| ||||||||||  |||||| ||||  ||  ||||||||| |    
T  19589160 tagtcactatatcagtcacaagttgactcttttgtaactct----ttcacttttgtatcatttcaactattttcaatataataatttcttaagctttttc 19589255  T
Q  119 tctctattttcatggatgccatgtttc 145  Q
    |||||||||||||||||||||||||||    
T  19589256 tctctattttcatggatgccatgtttc 19589282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 2577018 - 2577142
Alignment:
Q  21 tagtcactatataagtcacaagttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaatagctttgtaagctt-ttc 118  Q
    ||||||||||||||||||||||||||||||||||||  || || ||||||| ||||||| |||||||||| ||||||||||||  ||| ||||||| |||    
T  2577018 tagtcactatataagtcacaagttgactcatttgta--tcactttttcattcttgtatcatttcaactattatcaatacaataattttctaagcttcttc 2577115  T
Q  119 tctctattttcatggatgccatgtttc 145  Q
    |||||||||||||||||||||||||||    
T  2577116 tctctattttcatggatgccatgtttc 2577142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 1773661 - 1773530
Alignment:
Q  17 agtttagtcactatataagtcaca-agttgactcatttgtacctctctctttcattt-tgtatcttttcaactatcatcaatacaatagctttgtaagct 114  Q
    |||||||||||||||| ||||||| |||||||||||||||| |||| || ||  | | | |||| |||| ||||| |||||||||||| |||||||||||    
T  1773661 agtttagtcactatattagtcacagagttgactcatttgtatctctttcatttttgtatatatcatttctactattatcaatacaataactttgtaagct 1773562  T
Q  115 ttt-ctctctattttcatggatgccatgtttc 145  Q
    ||| ||||||||||| ||||||| ||||||||    
T  1773561 tttactctctatttttatggatgtcatgtttc 1773530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 18446618 - 18446735
Alignment:
Q  17 agtttagtcactatataagtcacaagttgactcatttgtacctctctctttca-ttttgtatcttttcaactatcatcaatacaatagctttgtaagctt 115  Q
    |||| |||||||||||||||||| |||||| || ||||||  ||| ||||||| ||||||||| |||||||||| |||||||||||||||        ||    
T  18446618 agttcagtcactatataagtcactagttgattc-tttgta--tctttctttcacttttgtatcatttcaactattatcaatacaatagct--------tt 18446706  T
Q  116 ttctctctattttcatggatgccatgttt 144  Q
    |||||||||||||||||||||||||||||    
T  18446707 ttctctctattttcatggatgccatgttt 18446735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 70 - 145
Target Start/End: Original strand, 26389241 - 26389317
Alignment:
Q  70 ttttgtatcttttcaactatcatcaatacaatagctttgtaagctttt-ctctctattttcatggatgccatgtttc 145  Q
    |||||||||| ||||||||| ||||||||||||  ||| |||| |||| ||||||||||||||||||||||||||||    
T  26389241 ttttgtatctcttcaactattatcaatacaataattttctaagttttttctctctattttcatggatgccatgtttc 26389317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 1715832 - 1715747
Alignment:
Q  22 agtcactatataagtcacaagttgactcatttgtacctctctctttca-ttttgtatcttttcaactatcatcaatacaatagcttt 107  Q
    ||||||||||||||| || ||||||||| |||||| |||||| ||||| |||| |||| |||||||||| |||||||||||| ||||    
T  1715832 agtcactatataagttactagttgactcttttgtatctctct-tttcacttttatatcatttcaactattatcaatacaataacttt 1715747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 9457682 - 9457739
Alignment:
Q  70 ttttgtatcttttcaactatcatcaatacaatagctttgtaagcttttctctctatttt 128  Q
    ||||||||| ||| ||||||||||||||||||||||||||||| |||| ||||||||||    
T  9457682 ttttgtatcattttaactatcatcaatacaatagctttgtaag-ttttttctctatttt 9457739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 26389208 - 26389252
Alignment:
Q  17 agtttagtcactatataagtcacaagttgactcatttgtacctct 61  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||    
T  26389208 agtttagtcactatataagtcacaagttgactcttttgtatctct 26389252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 26608143 - 26608007
Alignment:
Q  17 agtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatc-ttttcaactatcatcaatacaatagctttgtaagc 113  Q
    |||| ||| ||||||||||||||||| ||||||||| ||||||| ||| ||||||| ||||||| ||||||||||||||||||||||||  ||| |||||    
T  26608143 agttcagttactatataagtcacaaggttgactcatctgtacctatctttttcattcttgtatcattttcaactatcatcaatacaata--tttctaagc 26608046  T
Q  114 ttttctctctattttcatggatgccatgtttcctaacaa 152  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  26608045 ttttctctctattttcatggatgtcatgtttcttaacaa 26608007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 154
Target Start/End: Complemental strand, 20509239 - 20509104
Alignment:
Q  17 agtttagtcactatataagtcacaagttgactcatttgtacctctctctttcattttgtatcttttcaactatcatcaatacaatagctttgtaagct-t 115  Q
    |||||||||| ||||||||| |||||||||||||||| ||  ||||||||||||||| | | ||||||||||  ||| ||| ||||  |||  | | | |    
T  20509239 agtttagtcaatatataagttacaagttgactcatttata--tctctctttcatttt-tgtattttcaactagtatcgatataataattttcgacgttgt 20509143  T
Q  116 ttctctctattttcatggatgccatgtttcctaacaaat 154  Q
    ||||||||||||||||||||| ||||||||  |||||||    
T  20509142 ttctctctattttcatggatgtcatgtttctcaacaaat 20509104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 9664768 - 9664639
Alignment:
Q  17 agtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaatagctttgtaagct 114  Q
    |||||||| ||||||||||||||| | ||||||||||||||||| ||| ||||||| ||||||| |||||||||| ||||||||||||| |||  |||||    
T  9664768 agtttagttactatataagtcacatggttgactcatttgtacctatctttttcattcttgtatcatttcaactataatcaatacaatagtttttcaagct 9664669  T
Q  115 tttctctctattttcatggatgccatgttt 144  Q
    ||||||||||| | ||||||||||||||||    
T  9664668 tttctctctatatccatggatgccatgttt 9664639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 151
Target Start/End: Complemental strand, 21146941 - 21146819
Alignment:
Q  30 tataagtcacaagttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaatagctttgtaagctttt-ctctctattt 127  Q
    ||||||||||| |||||||||||||||||||||| ||||||| ||||||| ||||||||||  |||||||||||  ||| |||| |||| ||||||||||    
T  21146941 tataagtcacatgttgactcatttgtacctctct-tttcattcttgtatcatttcaactattttcaatacaataattttctaagttttttctctctattt 21146843  T
Q  128 tcatggatgccatgtttcctaaca 151  Q
    ||||||||| |||||||| |||||    
T  21146842 tcatggatgacatgtttcttaaca 21146819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 151
Target Start/End: Original strand, 787301 - 787437
Alignment:
Q  17 agtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaatagctttgtaagct 114  Q
    |||||||| ||||||||||||| | | ||||||||||||||||  ||| | ||||| ||||||| |||||| ||||||||||||||||| |||  || ||    
T  787301 agtttagttactatataagtcatatgattgactcatttgtaccgatctttctcattcttgtatcatttcaagtatcatcaatacaatagttttccaaact 787400  T
Q  115 tttctctctattttcatggatgccatgtttcctaaca 151  Q
    ||||||||||| |  ||||||| ||||||||||||||    
T  787401 tttctctctatatctatggatgacatgtttcctaaca 787437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 145
Target Start/End: Complemental strand, 33638902 - 33638784
Alignment:
Q  28 tatataagtcacaagttgactcatttgtacctctctctttcattttgtatcttttcaactatcatcaatacaatagctttgtaag-cttttctctctatt 126  Q
    ||||||||||| |||||||||| |||||| |||||| ||   |||||||||| ||||| ||| ||||| ||||||  |||  |||  |||||||||||||    
T  33638902 tatataagtcataagttgactcttttgtatctctcttttaacttttgtatctcttcaattattatcaagacaataattttcaaagttttttctctctatt 33638803  T
Q  127 ttcatggatgccatgtttc 145  Q
    |||||||||||||||||||    
T  33638802 ttcatggatgccatgtttc 33638784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 42 - 152
Target Start/End: Original strand, 3074971 - 3075083
Alignment:
Q  42 gttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaa-tacaatagctttgtaagcttttctctctattttcatggatgcca 139  Q
    |||| |||||||||| || ||| || |||| || |||| |||||||||||||||| |||||||| |||  |||||||||||||||| | |||||||||||    
T  3074971 gttgtctcatttgtatctatcttttccattcttatatcatttcaactatcatcaaatacaatagttttccaagcttttctctctatatccatggatgcca 3075070  T
Q  140 tgtttcctaacaa 152  Q
    ||||| |||||||    
T  3075071 tgttttctaacaa 3075083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 151
Target Start/End: Original strand, 27462136 - 27462277
Alignment:
Q  12 tcatcagtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaatagctttgt 109  Q
    |||| |||||||| ||||||||||||| | | ||||||||||||||||| ||| ||||||| ||||||| |||||||||| ||||||||||||| |||      
T  27462136 tcattagtttagttactatataagtcatatggttgactcatttgtacctatctttttcattcttgtatcatttcaactataatcaatacaatagttttcc 27462235  T
Q  110 aagcttttctctctattttcatggatgccatgtttcctaaca 151  Q
    |||||||||||||||| | |||||||||||||||| ||||||    
T  27462236 aagcttttctctctatatccatggatgccatgtttactaaca 27462277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 20868712 - 20868847
Alignment:
Q  19 tttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatctt-ttcaactatcatcaatacaatagctttgtaagctt 115  Q
    |||||| ||||||||||||||| | |||||| |||||||||| ||| ||||||| ||||||  | ||||||||||||||||||||||| ||| |||||||    
T  20868712 tttagttactatataagtcacatggttgacttatttgtacctatctttttcattcttgtattatgttcaactatcatcaatacaatagttttctaagctt 20868811  T
Q  116 ttctctctattttcatggatgccatgtttcctaaca 151  Q
    |||||||| |||||||||||||||||||||| ||||    
T  20868812 ttctctctcttttcatggatgccatgtttcccaaca 20868847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 153
Target Start/End: Original strand, 24595239 - 24595377
Alignment:
Q  17 agtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatc-ttttcaactatcatcaatacaatagctttgtaagc 113  Q
    |||||||| ||||||||||||||| | |||||||||||||||   ||| ||||||| ||||||| ||||||||||||||||||||||||| ||| |||||    
T  24595239 agtttagttactatataagtcacatggttgactcatttgtactaatctttttcattcttgtatcattttcaactatcatcaatacaatag-tttctaagc 24595337  T
Q  114 ttttctctctattttcatggatgccatgtttcctaacaaa 153  Q
    |||||||||||| ||||||||||   ||||||||||||||    
T  24595338 ttttctctctatcttcatggatgttgtgtttcctaacaaa 24595377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 20871350 - 20871490
Alignment:
Q  19 tttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatc-ttttcaactatcatcaat-----acaatagctttgta 110  Q
    |||||| ||||||||||||||| | ||||||||||||||||| ||| ||||||| ||||||  ||||||||||||||||||     ||||||| ||| ||    
T  20871350 tttagttactatataagtcacatggttgactcatttgtacctatctttttcattcttgtattattttcaactatcatcaatacaatacaatagttttcta 20871449  T
Q  111 agcttttctctctattttcatggatgccatgtttcctaaca 151  Q
    ||||||||||||| |||||||||||| ||||||||| ||||    
T  20871450 agcttttctctctcttttcatggatgtcatgtttcccaaca 20871490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 447206 - 447069
Alignment:
Q  17 agtttagtcactatataagtcacaa-gttgactcatttgtacctctctctttcattttg-tatcttttcaactatcatcaatacaatagctttgtaagct 114  Q
    |||||||  |||||| ||||||||| ||||||||||||||||||||||  ||||||||  |||| ||||||||| ||| ||||||| ||||||||||| |    
T  447206 agtttagatactatagaagtcacaaagttgactcatttgtacctctct--ttcatttttctatcatttcaactaccataaatacaacagctttgtaagtt 447109  T
Q  115 ttt--ctctctattttcatggatgccatgtttcctaacaa 152  Q
    |||  ||||||| |||||||||| ||||||||| ||||||    
T  447108 tttttctctctagtttcatggataccatgtttcttaacaa 447069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 51308829 - 51308955
Alignment:
Q  21 tagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaatagctttgtaagctttt- 117  Q
    |||| ||||||||||||||| | |||||||||||||||   ||||||| ||| ||||||| |||||||||| ||||||||||||  ||| |||||||||     
T  51308829 tagttactatataagtcacatggttgactcatttgtactaatctcttttattcttgtatcatttcaactattatcaatacaataa-tttataagcttttt 51308927  T
Q  118 ctctctattttcatggatgccatgtttc 145  Q
    ||||||||||||||||||| ||||||||    
T  51308928 ctctctattttcatggatgtcatgtttc 51308955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 70 - 145
Target Start/End: Original strand, 51306418 - 51306493
Alignment:
Q  70 ttttgtatcttttcaactatcatcaatacaatagctttgtaagctttt-ctctctattttcatggatgccatgtttc 145  Q
    ||||||||| ||| |||||| ||||||||||||  ||| ||||||||| ||||||||||||||||||| ||||||||    
T  51306418 ttttgtatcattttaactattatcaatacaataa-tttctaagctttttctctctattttcatggatgtcatgtttc 51306493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 35610831 - 35610878
Alignment:
Q  17 agtttagtcactatataagtcacaa-gttgactcatttgtacctctct 63  Q
    |||||||| |||||||||||||||| |||||||||||||||| |||||    
T  35610831 agtttagttactatataagtcacaaggttgactcatttgtacatctct 35610878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 151
Target Start/End: Original strand, 27462290 - 27462344
Alignment:
Q  97 acaatagctttgtaagcttttctctctattttcatggatgccatgtttcctaaca 151  Q
    ||||||| |||  |||||||||||||||| | |||||||||||||||| ||||||    
T  27462290 acaatagttttccaagcttttctctctatatccatggatgccatgtttactaaca 27462344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 16385597 - 16385725
Alignment:
Q  17 agtttagtcactatataagtcacaagttgactcatttgtacctctctctttca-ttttgtatcttttcaactatcatcaatacaatagctttgtaagc-t 114  Q
    |||||||||||| ||||||||||||||||||||||||||||   ||||||||| ||||||||| |||   |||| |||||||||||| |||||||||| |    
T  16385597 agtttagtcactgtataagtcacaagttgactcatttgtac--atctctttcatttttgtatcattttccctataatcaatacaataactttgtaagctt 16385694  T
Q  115 tttctctctattttcatggatgccatgtttc 145  Q
    ||||| |||||||||||||||||||||||||    
T  16385695 tttctttctattttcatggatgccatgtttc 16385725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 20225627 - 20225517
Alignment:
Q  17 agtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaatagctttgtaagct 114  Q
    |||||||| ||||||||||||||| | ||||||| ||||||||| ||| || |||| ||||||| |||||| ||||||||||||||||| |||| |||||    
T  20225627 agtttagttactatataagtcacatggttgactcttttgtacctatcttttccattcttgtatcatttcaattatcatcaatacaatagttttgcaagct 20225528  T
Q  115 tttctctctat 125  Q
    |||||||||||    
T  20225527 tttctctctat 20225517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 42 - 151
Target Start/End: Complemental strand, 20226932 - 20226820
Alignment:
Q  42 gttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaatagctttgtaagcttttct--ctctattttcatggatgcc 138  Q
    |||||||| ||||||||| ||| ||||||| ||||||| |||||| ||||||||||||||||| |||  || |||||||  |||||| | |||| |||||    
T  20226932 gttgactcttttgtacctatctttttcattcttgtatcatttcaattatcatcaatacaatagtttttcaaacttttctctctctatatccatgaatgcc 20226833  T
Q  139 atgtttcctaaca 151  Q
     ||||||||||||    
T  20226832 gtgtttcctaaca 20226820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 27356151 - 27356025
Alignment:
Q  19 tttagtcactatataagtcacaagttgactcatttgtacctctctctttcatttt-gtatcttttcaactatcatcaatacaatagctttgtaag-cttt 116  Q
    |||||||||| |||||| || ||||||| | || ||||  ||||||||||||||| ||||| |||  |||||||||||||||||| | || ||||  |||    
T  27356151 tttagtcactgtataagacataagttgaattatatgta--tctctctttcatttttgtatcattttcactatcatcaatacaataaccttttaagttttt 27356054  T
Q  117 tctctctattttcatggatgccatgtttc 145  Q
    ||||||| ||||||||| | |||||||||    
T  27356053 tctctcttttttcatgggtaccatgtttc 27356025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 145
Target Start/End: Original strand, 12685139 - 12685250
Alignment:
Q  34 agtcacaagttgactcatttgtacctctctctttca-ttttgtatcttttcaactatcatcaatacaatagctttgtaagcttttc-tctctattttcat 131  Q
    |||||| ||||||||| ||||||  ||||||||| | |||| |||| |||  ||||| ||||||| |||| |||| ||||| |||| |||||||||| ||    
T  12685139 agtcactagttgactcttttgta--tctctctttaacttttatatcattttcactattatcaatataataactttctaagcctttcctctctatttttat 12685236  T
Q  132 ggatgccatgtttc 145  Q
    ||||||||||||||    
T  12685237 ggatgccatgtttc 12685250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 55849556 - 55849419
Alignment:
Q  17 agtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaatagctttgt-aagc 113  Q
    |||| ||| ||||||||||||||| | ||||||||||||||||| ||| || |||| ||||||| |||||||||||||||||||||||| |||   ||||    
T  55849556 agttcagttactatataagtcacatggttgactcatttgtacctatcttttccattcttgtatcatttcaactatcatcaatacaatagttttcccaagc 55849457  T
Q  114 ttttctctctattttcatggatgccatgtttcctaaca 151  Q
    |||||||||||| | |||||||||||||||||||||||    
T  55849456 ttttctctctatatccatggatgccatgtttcctaaca 55849419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 46432478 - 46432596
Alignment:
Q  19 tttagtcactatataagtcacaagttgactcatttgtacctctctctttca-ttttgtatcttttcaactatcatcaatacaatagctttgtaagctttt 117  Q
    |||||||||  || ||||||| ||||||||| ||| ||  || |||||||| ||||||||| |||  ||||| ||||||||||||  |||||||||||||    
T  46432478 tttagtcaccgtaaaagtcactagttgactcttttata--tccctctttcacttttgtatcatttttactattatcaatacaataattttgtaagctttt 46432575  T
Q  118 -ctctctattttcatggatgc 137  Q
     ||||||||||||||||||||    
T  46432576 cctctctattttcatggatgc 46432596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 55852115 - 55852053
Alignment:
Q  42 gttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaatag 103  Q
    |||||||||||||||  | ||| || |||| ||||||| ||||||||||||||||||||||||    
T  55852115 gttgactcatttgtagttatcttttacattcttgtatcatttcaactatcatcaatacaatag 55852053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 4215266 - 4215395
Alignment:
Q  17 agtttagtcactatataagtcacaagttgactcatttgtacctctctctttca-ttttgtatcttttcaactatcatcaatacaatagctttgtaagc-t 114  Q
    |||| |||||||||||||||||  ||||||||| |||||| |||||| ||||| |||| |||| |||||||||| |||||||||||| |||| ||||| |    
T  4215266 agttgagtcactatataagtcattagttgactcttttgtatctctct-tttcacttttatatcatttcaactattatcaatacaataactttctaagctt 4215364  T
Q  115 tttctctctattttcatggatgccatgtttc 145  Q
    |||||||| ||||||||||||||||||||||    
T  4215365 tttctctccattttcatggatgccatgtttc 4215395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 28 - 145
Target Start/End: Complemental strand, 37498327 - 37498209
Alignment:
Q  28 tatataagtcacaagttgactcatttgtacctctctctttca-ttttgtatcttttcaactatcatcaatacaatagctttgtaag-cttttctctctat 125  Q
    ||||||||||||||||||||||||||||||| || ||||| | |||| |||| |||||||||||||||||||||||   || ||||  ||||||||| ||    
T  37498327 tatataagtcacaagttgactcatttgtacccct-tcttttacttttatatcatttcaactatcatcaatacaataatcttctaagttttttctctccat 37498229  T
Q  126 tttcatggatgccatgtttc 145  Q
    ||||||||||||||| ||||    
T  37498228 tttcatggatgccatatttc 37498209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 27172961 - 27172855
Alignment:
Q  17 agtttagtcactatataagtcacaagttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaatagctttgtaagctt 115  Q
    |||||||| |||||||||||||  || ||||||||||||| || ||| || |||| ||||||| |||||||||||||||||| ||||| |||  ||||||    
T  27172961 agtttagttactatataagtcattaggtgactcatttgtaactatcttttccattcttgtatcatttcaactatcatcaatagaatagttttccaagctt 27172862  T
Q  116 ttctctc 122  Q
    |||||||    
T  27172861 ttctctc 27172855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 145
Target Start/End: Complemental strand, 18587452 - 18587369
Alignment:
Q  63 tctttcat-tttgtatcttttcaactatcatcaatacaatagctttgtaag-cttttctctctattttcatggatgccatgtttc 145  Q
    |||||||| |||||||| ||| |||||||||||||| || |  ||| ||||  |||||||||||||| |||||||||||||||||    
T  18587452 tctttcatctttgtatcattttaactatcatcaatataa-atttttctaagttttttctctctatttccatggatgccatgtttc 18587369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 145
Target Start/End: Original strand, 48431 - 48554
Alignment:
Q  24 tcactatataagtcacaagttgactcatttgtacctctctctttcattttgtatcttttcaactatcatcaatacaatagctttgtaagctt--ttctct 121  Q
    ||||||||||||||||||||||| || |||||| || ||| ||  ||||||||||  |||||| || ||||||||||||  ||| |||||||  ||||||    
T  48431 tcactatataagtcacaagttgattcttttgtaactatcttttcaattttgtatcccttcaacaattatcaatacaataattttctaagctttcttctct 48530  T
Q  122 ctattttcatggatgccatgtttc 145  Q
    ||| ||||||||||| ||||||||    
T  48531 ctactttcatggatgtcatgtttc 48554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0889 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0889
Description:

Target: scaffold0889; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 136
Target Start/End: Complemental strand, 3339 - 3292
Alignment:
Q  89 tcatcaatacaatagctttgtaagcttttctctctattttcatggatg 136  Q
    ||||| ||||||||| ||||||||||||| ||||||||||||||||||    
T  3339 tcatcgatacaatagttttgtaagcttttatctctattttcatggatg 3292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0870 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0870
Description:

Target: scaffold0870; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 136
Target Start/End: Complemental strand, 3543 - 3496
Alignment:
Q  89 tcatcaatacaatagctttgtaagcttttctctctattttcatggatg 136  Q
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T  3543 tcatcgatacaatagttttgtaagcttttatctctattttcatggatg 3496  T

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