View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17047_low_27 (Length: 245)
Name: NF17047_low_27
Description: NF17047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17047_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 31908779 - 31908541
Alignment:
| Q |
1 |
ctaccagaagcagcacatgaccccttggtgctctactttaagcaataacaacagctccagaaaatgcatcaattccatatatttgatacaacacaaccaa |
100 |
Q |
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| T |
31908779 |
ctaccagaagcagcacatgaccccttggtgctctactttaagcaataacaacagctccagaaaatgcatcaattccatatatttgatacaacacaaccaa |
31908680 |
T |
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| Q |
101 |
ccataatcaataacattaaaaatccatataggatagggaaactaaaactagttaaagtgaaaacacacaacaagataatttaccttggagatttctgatt |
200 |
Q |
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| T |
31908679 |
ccataatcaataacattaaaaat-catatatgatagggaaactaaaactagttaaagtgaaaacacacaacaagataatttaccttggagatttctgatt |
31908581 |
T |
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| Q |
201 |
tcttattcttcaagggtcggtgaatcgaatatcatctgtg |
240 |
Q |
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| T |
31908580 |
tcttattcttcaagggtccgtgaatcgaatatcatctgtg |
31908541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 40 - 115
Target Start/End: Complemental strand, 31900081 - 31900006
Alignment:
| Q |
40 |
aagcaataacaacagctccagaaaatgcatcaattccatatatttgatacaacacaaccaaccataatcaataaca |
115 |
Q |
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|||| |||||| ||||||||||| ||||||||||||||||||| | | |||||||||||||||||||||||||||| |
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| T |
31900081 |
aagccataacagcagctccagaagatgcatcaattccatatatctaacacaacacaaccaaccataatcaataaca |
31900006 |
T |
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