View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17047_low_31 (Length: 238)

Name: NF17047_low_31
Description: NF17047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17047_low_31
NF17047_low_31
[»] chr3 (4 HSPs)
chr3 (15-224)||(11006390-11006598)
chr3 (113-221)||(11015956-11016064)
chr3 (110-221)||(11024968-11025079)
chr3 (152-224)||(47452335-47452407)
[»] chr4 (16 HSPs)
chr4 (155-224)||(7800218-7800287)
chr4 (155-224)||(7813061-7813130)
chr4 (152-224)||(7822547-7822619)
chr4 (152-221)||(7789667-7789736)
chr4 (152-221)||(7904610-7904679)
chr4 (151-221)||(33134257-33134327)
chr4 (152-221)||(7770982-7771051)
chr4 (156-221)||(48862823-48862888)
chr4 (153-221)||(7774260-7774328)
chr4 (153-221)||(7877299-7877367)
chr4 (158-221)||(45372488-45372551)
chr4 (153-224)||(50668622-50668693)
chr4 (153-223)||(7907904-7907974)
chr4 (152-221)||(7238151-7238220)
chr4 (155-224)||(45366649-45366718)
chr4 (153-221)||(48902529-48902597)
[»] chr6 (1 HSPs)
chr6 (153-224)||(21015355-21015426)
[»] chr8 (5 HSPs)
chr8 (158-224)||(4032344-4032410)
chr8 (164-221)||(12199897-12199954)
chr8 (164-221)||(12444325-12444382)
chr8 (165-221)||(12194892-12194948)
chr8 (165-221)||(12439320-12439376)
[»] chr7 (1 HSPs)
chr7 (153-221)||(48883361-48883429)


Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 11006598 - 11006390
Alignment:
Q  15 cagagaaggattaaatatcactgagccctctcttactacctcatcaccaacgtagtaatactttatctttcaca-gtcatacaaattaaattagttacaa 113  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||    
T  11006598 cagagaaggattaaatatcactgagccctctcttactatctcatcaccaacgtagtaatactttatctttcacaagtcata--aattaaattagttacaa 11006501  T
Q  114 ttgcagagaaggaagacagatggagatgaagaccggcctgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttata 213  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11006500 ttgcagagaaggaagacagatggagacgaagaccggcctgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttata 11006401  T
Q  214 cgtttcaagtg 224  Q
    |||||||||||    
T  11006400 cgtttcaagtg 11006390  T

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Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 113 - 221
Target Start/End: Complemental strand, 11016064 - 11015956
Alignment:
Q  113 attgcagagaaggaagacagatggagatgaagaccggcctgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttat 212  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||| || ||    
T  11016064 attgcagaggaggaagacagatggagaagaagaccggcctgtatctgcctcatgaattgataatacaaatcatgttgaggttaccggtgaagtctctcat 11015965  T
Q  213 acgtttcaa 221  Q
    |||||||||    
T  11015964 acgtttcaa 11015956  T

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Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 110 - 221
Target Start/End: Complemental strand, 11025079 - 11024968
Alignment:
Q  110 acaattgcagagaaggaagacagatggagatgaagaccggcctgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcact 209  Q
    ||||||||| || ||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||| ||    
T  11025079 acaattgcataggaggaagacagatggagaagaagaccgacctgtatttgcctcatgaattgatcatacaaatcatgttgaggttaccggtgaagtctct 11024980  T
Q  210 tatacgtttcaa 221  Q
     |||||||||||    
T  11024979 catacgtttcaa 11024968  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 224
Target Start/End: Complemental strand, 47452407 - 47452335
Alignment:
Q  152 tgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtg 224  Q
    ||||||| |||| ||||||||| || || |||||| ||||||||||||||||||| ||| |||| ||||||||    
T  47452407 tgtatctacctcttgaattgataatccagatcttggtgaggttgccggtgaagtctcttgtacgcttcaagtg 47452335  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 7800218 - 7800287
Alignment:
Q  155 atctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtg 224  Q
    ||||||||||||| ||||| || | ||||||||||||||||||||||||||  |||||||||||||||||    
T  7800218 atctgcctcatgatttgataatcctaatcttgttgaggttgccggtgaagtatcttatacgtttcaagtg 7800287  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 7813061 - 7813130
Alignment:
Q  155 atctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtg 224  Q
    ||||||||||||| ||||| || | ||||||||||||||||||||||||||  |||||||||||||||||    
T  7813061 atctgcctcatgatttgataatcctaatcttgttgaggttgccggtgaagtatcttatacgtttcaagtg 7813130  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 7822547 - 7822619
Alignment:
Q  152 tgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtg 224  Q
    |||||||||||||| | ||||| || | ||||||||||||||||||||||||||  |||||||||||||||||    
T  7822547 tgtatctgcctcatcatttgataatcctaatcttgttgaggttgccggtgaagtatcttatacgtttcaagtg 7822619  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 7789667 - 7789736
Alignment:
Q  152 tgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaa 221  Q
    ||||||||||||||||| |||| || |||||  || ||||||||||||||||||| |||||| |||||||    
T  7789667 tgtatctgcctcatgaactgataatccaaattctgatgaggttgccggtgaagtctcttatatgtttcaa 7789736  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 7904610 - 7904679
Alignment:
Q  152 tgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaa 221  Q
    ||||||| |||| ||||||||| || ||||||||| || ||||||| |||||||| ||||||||||||||    
T  7904610 tgtatcttcctcgtgaattgattattcaaatcttgatgtggttgcctgtgaagtctcttatacgtttcaa 7904679  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 221
Target Start/End: Complemental strand, 33134327 - 33134257
Alignment:
Q  151 ctgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaa 221  Q
    |||||||||||||||||||||||||| |  ||  ||||||| || ||||||||||| ||||| ||||||||    
T  33134327 ctgtatctgcctcatgaattgatcatccttattctgttgagattaccggtgaagtctcttattcgtttcaa 33134257  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 7770982 - 7771051
Alignment:
Q  152 tgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaa 221  Q
    ||||||||||||||||| | || || |||||  || ||||||||||||||||||| |||||| |||||||    
T  7770982 tgtatctgcctcatgaactaataatccaaattctgatgaggttgccggtgaagtctcttatatgtttcaa 7771051  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 48862823 - 48862888
Alignment:
Q  156 tctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaa 221  Q
    ||||||||||||||||||||| | |||| || | ||||| ||||||||||| ||||| ||||||||    
T  48862823 tctgcctcatgaattgatcatcctaatcctgctaaggttaccggtgaagtctcttattcgtttcaa 48862888  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 221
Target Start/End: Complemental strand, 7774328 - 7774260
Alignment:
Q  153 gtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaa 221  Q
    |||||| |||||||||||||| || ||||||||| || || ||||||||||||| ||||| | ||||||    
T  7774328 gtatcttcctcatgaattgattattcaaatcttgatgcggctgccggtgaagtctcttattcatttcaa 7774260  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 7877299 - 7877367
Alignment:
Q  153 gtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaa 221  Q
    |||||| |||||||||||||| || |||||| || |  |||||| ||||||||| ||||||||||||||    
T  7877299 gtatcttcctcatgaattgattatccaaatcctgatttggttgctggtgaagtctcttatacgtttcaa 7877367  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 45372551 - 45372488
Alignment:
Q  158 tgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaa 221  Q
    |||||||||||||||| || |||||  |  | ||||||||||||||||| ||||||||||||||    
T  45372551 tgcctcatgaattgatgattcaaattctactaaggttgccggtgaagtctcttatacgtttcaa 45372488  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 224
Target Start/End: Original strand, 50668622 - 50668693
Alignment:
Q  153 gtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtg 224  Q
    |||||||| | | ||||||||||| ||||| ||| |||||||||| ||||| |  |||||||||||||||||    
T  50668622 gtatctgcattacgaattgatcattcaaattttggtgaggttgcccgtgaaatatcttatacgtttcaagtg 50668693  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 7907904 - 7907974
Alignment:
Q  153 gtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagt 223  Q
    |||||| ||||||||||||||  | || ||| |  ||||||||||||||||||| |||| |||||||||||    
T  7907904 gtatcttcctcatgaattgattttccagatcctactgaggttgccggtgaagtctcttacacgtttcaagt 7907974  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 7238220 - 7238151
Alignment:
Q  152 tgtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaa 221  Q
    ||||||||||||||||| | ||||| |||||  || |||||||||| |||||||| |||||  |||||||    
T  7238220 tgtatctgcctcatgaactaatcatccaaattctgatgaggttgccagtgaagtctcttatctgtttcaa 7238151  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 224
Target Start/End: Complemental strand, 45366718 - 45366649
Alignment:
Q  155 atctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtg 224  Q
    |||| |||||||||||||| || |||||| |  | ||||| || |||||||| |||||||||||||||||    
T  45366718 atcttcctcatgaattgatgatccaaatcctactaaggttaccagtgaagtctcttatacgtttcaagtg 45366649  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 48902529 - 48902597
Alignment:
Q  153 gtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaa 221  Q
    |||||| ||||||||||||||||| ||||| |||  | |||||||||| ||||| || || ||||||||    
T  48902529 gtatctacctcatgaattgatcatccaaattttgcagtggttgccggtaaagtctctcattcgtttcaa 48902597  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 224
Target Start/End: Original strand, 21015355 - 21015426
Alignment:
Q  153 gtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtg 224  Q
    |||||||||||| ||||||||||| | ||| ||||||||||| ||||| | ||| ||| |||||||||||||    
T  21015355 gtatctgcctcaagaattgatcatcctaattttgttgaggttaccggtcatgtctcttctacgtttcaagtg 21015426  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 224
Target Start/End: Complemental strand, 4032410 - 4032344
Alignment:
Q  158 tgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaagtg 224  Q
    ||||||||||||||||||| ||||||||  ||||  | ||  ||||||| |||||||||||||||||    
T  4032410 tgcctcatgaattgatcatccaaatcttactgagactaccaatgaagtctcttatacgtttcaagtg 4032344  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 12199897 - 12199954
Alignment:
Q  164 atgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaa 221  Q
    ||||||| ||||| |||||| || ||||||||||||||||||| ||| || |||||||    
T  12199897 atgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaa 12199954  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 12444325 - 12444382
Alignment:
Q  164 atgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaa 221  Q
    ||||||| ||||| |||||| || ||||||||||||||||||| ||| || |||||||    
T  12444325 atgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaa 12444382  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 12194892 - 12194948
Alignment:
Q  165 tgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaa 221  Q
    |||||| ||||| |||||| || ||||||||||||||||||| ||| || |||||||    
T  12194892 tgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaa 12194948  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 12439320 - 12439376
Alignment:
Q  165 tgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaa 221  Q
    |||||| ||||| |||||| || ||||||||||||||||||| ||| || |||||||    
T  12439320 tgaattaatcattcaaatcctgctgaggttgccggtgaagtctcttttatgtttcaa 12439376  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 48883361 - 48883429
Alignment:
Q  153 gtatctgcctcatgaattgatcatacaaatcttgttgaggttgccggtgaagtcacttatacgtttcaa 221  Q
    ||||||||||| |||||| ||||| ||||| ||| ||||||| |  |||||||| ||| ||||||||||    
T  48883361 gtatctgcctcttgaattaatcattcaaattttggtgaggttacatgtgaagtctcttttacgtttcaa 48883429  T

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