View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17047_low_4 (Length: 479)
Name: NF17047_low_4
Description: NF17047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17047_low_4 |
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| [»] scaffold0012 (2 HSPs) |
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Alignment Details
Target: scaffold0012 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 122 - 465
Target Start/End: Complemental strand, 243275 - 242931
Alignment:
| Q |
122 |
aaaattatcaattgaaacgaaaacaccagtttgtttggaacgaaaacaccagaatgtttgccattaatttgatttctgtatggttaccattaatttcaat |
221 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
243275 |
aaaattatcaattgaaacgaaaagaccagtttgtttggaacgaaaacaccagaatgtttgccattaatttgatttctgaatggttaccattaatttcaat |
243176 |
T |
|
| Q |
222 |
ttcccttctccctaaccttggtctgtttggaacgaaaacaccaatgtttagtcctaaaaagttatcagttttttatgatcaatgcctctactaaaggctt |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
243175 |
ttcccttctccctaaccttggtctgtttggaacgaaaacaccaatgtttagtcctaaaaagttatcagttttttatgatcaatgcctctactaaaggctt |
243076 |
T |
|
| Q |
322 |
ttatgtgtggaattagtagtttgggctctatcaacaatttgttgcttataatcaaagtggaagatttgtttcttgtgctgtcatttgattatgaaattgt |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
243075 |
ttatgtgtggaattagtagtttgggctctatcaacaatttgttgcttataatcaaagtggaagatttgtttcttgtgctgtcatttgattatgagattgt |
242976 |
T |
|
| Q |
422 |
tacgggaattatgggtttg-tattggtattgttgtcatttgattt |
465 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
242975 |
tacgggaattatgggtttgttattggtattgttgtcatttgattt |
242931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 243396 - 243313
Alignment:
| Q |
1 |
ctctacttcatacccaaaataagaattcagcagcacataaacataacaaaattaaagtaaaattgtataatttaataaaacatt |
84 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
243396 |
ctctacttcatacccaaaataaaaattcagcagcacataaacataacaaaattaaagtaaaattgtataatttaataaaacatt |
243313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 122 - 465
Target Start/End: Complemental strand, 6710512 - 6710175
Alignment:
| Q |
122 |
aaaattatcaattgaaacgaaaacaccagtttgtttggaacgaaaacaccagaatgtttgccattaatttgatttctgtatggttaccattaatttcaat |
221 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||| |
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| T |
6710512 |
aaaattatcaattgaaacgaaaacaccagtttttttggaacgaaaacaccagaatgtt-------aatttaatttctgaatggttaccattaatttcaat |
6710420 |
T |
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| Q |
222 |
ttcccttctccctaaccttggtctgtttggaacgaaaacaccaatgtttagtcctaaaaagttatcagttttttatgatcaatgcctctactaaaggctt |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6710419 |
ttcccttctccctaaccttggtctgtttggaacgaaaacaccaatgtttagtcctaaaaagttatcagttttttatgatcaatgcctctactaaaggctt |
6710320 |
T |
|
| Q |
322 |
ttatgtgtggaattagtagtttgggctctatcaacaatttgttgcttataatcaaagtggaagatttgtttcttgtgctgtcatttgattatgaaattgt |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6710319 |
ttatgtgtggaattagtagtttgggctctatcaacaatttgttgcttataatcaaagtggaagatttgtttcttgtgctgtcatttgattatgagattgt |
6710220 |
T |
|
| Q |
422 |
tacgggaattatgggtttg-tattggtattgttgtcatttgattt |
465 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6710219 |
tacgggaattatgggtttgttattggtattgttgtcatttgattt |
6710175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 6710633 - 6710550
Alignment:
| Q |
1 |
ctctacttcatacccaaaataagaattcagcagcacataaacataacaaaattaaagtaaaattgtataatttaataaaacatt |
84 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
6710633 |
ctctacttcatacccaaaataaaaattcagcagcacataaacataacaaaattaaagtaaaattgtatgatttaataaaacatt |
6710550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 160 - 464
Target Start/End: Complemental strand, 47606272 - 47605970
Alignment:
| Q |
160 |
aacgaaaacaccagaatgtttgccattaatttgatttctgtatggttaccattaatttcaatttcccttctccctaaccttggtctgtttggaacgaaaa |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47606272 |
aacgaaaacaccagaatgtttgccattaatttgatttctgtatggttaccattaatttcaatttcccttctccctaaccttggtctgtttggaacgaaaa |
47606173 |
T |
|
| Q |
260 |
caccaatgtttagtcctaaaaagttatcagttttttatgatcaatgcctctactaaaggcttttatgtgtggaattagtagtttgggctctatcaacaat |
359 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47606172 |
caccaatgtttagtcctataaagttatcagttttttatgatcaatgcctctactaaaggcttttatgtgtggaattagtagtttgggctctatcaacaat |
47606073 |
T |
|
| Q |
360 |
ttgttgcttataatcaaagtggaagatttgtttcttgtgctgtcatttgattatgaaattgttacgggaattatgggtttg-tattggtattgttgtcat |
458 |
Q |
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||||||||||||||||||||||||||||||||||||||| | ||||||||||||| | |||||||||||||||||||| |||||||||||||||||| |
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| T |
47606072 |
ttgttgcttataatcaaagtggaagatttgtttcttgtgttttcatttgattatg---tgattacgggaattatgggtttgttattggtattgttgtcat |
47605976 |
T |
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| Q |
459 |
ttgatt |
464 |
Q |
| |
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|||||| |
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| T |
47605975 |
ttgatt |
47605970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 47606408 - 47606325
Alignment:
| Q |
1 |
ctctacttcatacccaaaataagaattcagcagcacataaacataacaaaattaaagtaaaattgtataatttaataaaacatt |
84 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47606408 |
ctctacttcatacccaaaataaaaattcagcagcacataaacataacaaaattaaagtaaaattgtataatttaataaaacatt |
47606325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 308 - 368
Target Start/End: Original strand, 48719862 - 48719922
Alignment:
| Q |
308 |
tctactaaaggcttttatgtgtggaattagtagtttgggctctatcaacaatttgttgctt |
368 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
48719862 |
tctactaaaggcttttatgtgtggaattaatagtttgagctctatcaacaatttgttgctt |
48719922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 150
Target Start/End: Complemental strand, 47606287 - 47606259
Alignment:
| Q |
122 |
aaaattatcaattgaaacgaaaacaccag |
150 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
47606287 |
aaaattatcaattgaaacgaaaacaccag |
47606259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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