View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17047_low_7 (Length: 380)
Name: NF17047_low_7
Description: NF17047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17047_low_7 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 17 - 380
Target Start/End: Complemental strand, 21490724 - 21490361
Alignment:
| Q |
17 |
acaactgccatttcaatcgaatcgccagtattttctttcacaaattaaaggtttgtagcgcaatcgcgattgcaaccgtaatttaaaaccatggtataga |
116 |
Q |
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| T |
21490724 |
acaactgccatttcaatcgaatcgtcagtattttctttcacaaattaaaggtttgtagcgcaatcgcgattgcaaccgtaatttaaaaccatggtataga |
21490625 |
T |
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| Q |
117 |
tggtgaaaaaccaagttgggtggttaatactggtttgagctaagggattaaaggagttaaaggttcaaggttcgaatcctagtaaggtgaaatatgctaa |
216 |
Q |
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| T |
21490624 |
tggtgaaaaaccaagttgggtggttaatactggtttgagctaagggattaaaggagttaaaggttcaaggttcgaatcctagtaaggtgaaatatgctaa |
21490525 |
T |
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| Q |
217 |
cataacaattgctaatataattaatgttggaagtagaagttgagggaaaaatatgaataccctctactgcatggactttttatggttgtagatggacagt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21490524 |
cataacaattgctaatataattaatgttggaagtagaagttgagggaaaaatatgaataccctctactgcatggactttttatggttgtagatggacagt |
21490425 |
T |
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| Q |
317 |
atgatccagctgaacagaatacctcaccactacttgtaatgtccgcccaaatctctgctcctcc |
380 |
Q |
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| T |
21490424 |
atgatcctgctgaacagaatacctcaccactacttgtaatgtctgcccaaatatcggctcctcc |
21490361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 183
Target Start/End: Original strand, 28485960 - 28485998
Alignment:
| Q |
145 |
actggtttgagctaagggattaaaggagttaaaggttca |
183 |
Q |
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| T |
28485960 |
actggtttgagctaagtgattaaaggagttaagggttca |
28485998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 48323892 - 48323851
Alignment:
| Q |
155 |
gctaagggattaaaggagttaaaggttcaaggttcgaatcct |
196 |
Q |
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| T |
48323892 |
gctaagggtttaaaggagttaaaggtccagggttcgaatcct |
48323851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 5446380 - 5446329
Alignment:
| Q |
151 |
ttgagctaagggattaaaggagttaaaggttcaaggttcgaatcctagtaagg |
203 |
Q |
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| T |
5446380 |
ttgagctaaatgattaaaggagttaaag-ttcaaggttcgaatcctagtaagg |
5446329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 226
Target Start/End: Original strand, 18722215 - 18722289
Alignment:
| Q |
151 |
ttgagctaagggattaaaggagttaaaggttcaaggttcgaatcctagtaaggtgaaatatgctaacataacaatt |
226 |
Q |
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| T |
18722215 |
ttgagctaagggattaaag-agttaaaggttcagggtttgaatcctggcaagggagaaaatgctaacataacaatt |
18722289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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