View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17047_low_9 (Length: 361)
Name: NF17047_low_9
Description: NF17047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17047_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 7 - 289
Target Start/End: Complemental strand, 16027297 - 16027015
Alignment:
| Q |
7 |
atatattcatataggatccactaaagtattaattaagacaactttttaaagatgaataatttctctcgttgaattaatattaaaatattatagaatcgag |
106 |
Q |
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| T |
16027297 |
atatattcatataggatccactaaagtattaattaagacaactttttaaagaagaataatttctctcgttgaattaatattaaaatattatagaatcaag |
16027198 |
T |
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| Q |
107 |
atctggtatataaaaaagttggagttgcagaacgaaatttagaatatgttaaactgaaatttgaaatatatcctgctatagaaattccactagacattca |
206 |
Q |
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| T |
16027197 |
atgtggtatataaaaaagttggagttgcagaatgaaatttagcatatgttaaactgaaatttgaaatatatcctgctatagaaattccactagacactca |
16027098 |
T |
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| Q |
207 |
tgaaggtgagaaagaccgtgcgtatcactcgacattgagtgacacgaccatgcgctcctgtggaacgaacatacgctcctatg |
289 |
Q |
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| T |
16027097 |
tgaaggtgagaaagaccgtgcgtatcactcgacattgagtgacacgaccatgcgctcctgtggcacgaacatacgctcctatg |
16027015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 281 - 343
Target Start/End: Complemental strand, 16025730 - 16025668
Alignment:
| Q |
281 |
gctcctatggcacgaccgtgtgtcctgttctctgcgcgggaagtcagatttttagttgttttt |
343 |
Q |
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| T |
16025730 |
gctcttatggcacgaccgtgtgtcctatcctctgcacgggaagtcagatttttagttgttttt |
16025668 |
T |
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